Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3258 ATGAATAGAGGTGTCTTGCAAAGCTCACCGGTGCAACAAATGATGGCTGCAAACCCTAACAATTGGTGGAACATCAACACCATGCGCCCTCCTCCGCCTTCTCCTCCTCCTCCTCCCTCTCACCCTTCTTCTCCTTTCTTCTCCACTCCTTCTAACTTTCTAACTCCGTATAACACCTCTTCTTCTCTTCCTCTTCCTTCTTGGCATGATAACAATCAAGAACTACCTGAGTCATGGAGCCAGCTTCTCATGAGTGGGATGGTGTCTGAAGAAGAGAAAGGGGCTATGTGCCAGGTTCAGCAACAAATGCTGAGTCAAGTTAAGCAAGAAGGGTCGGTGAACAGCTACGTGTACGGTCATGGAAACGAAGAGTTTCACCCAGCAAAGCCAACTTGGCCTCAAACAGTGCCTTCTTCTTCCCCCAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTAGATTTCTCTAACAGTAACACAGATGCTAGGCCTCCTCCTCCAGACCCATCATTAGAGTGTAATAGCACTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACGCAGTCGACCTTCAAGGTTAGGAAGGAAAAATTAGGTGACAGAATTACAGCCCTTCATCAACTTGTTTCCCCGTTTGGAAAGACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGTAATGGATCAGGAAACATGAGACAGCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAACGAAAACTGTTTGAAGAGGAAAGCAACTAGTGAGCAGGATTCTGAAGAAGAGGCGAAGAAGAAGGATCTAAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCACCAGCTTTTGGAGGGGGGTTTCGGTAG 1008 0.4702 MNRGVLQSSPVQQMMAANPNNWWNINTMRPPPPSPPPPPSHPSSPFFSTPSNFLTPYNTSSSLPLPSWHDNNQELPESWSQLLMSGMVSEEEKGAMCQVQQQMLSQVKQEGSVNSYVYGHGNEEFHPAKPTWPQTVPSSSPKSCVTSFSSSMLDFSNSNTDARPPPPDPSLECNSTAAGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGNGSGNMRQQQSVQGEKNCIFPEDPGQLLNENCLKRKATSEQDSEEEAKKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3258 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Vra7g3258 335 CDD bHLH_AtbHLH_like 195 244 IPR045239 -
Vra7g3258 335 Gene3D - 194 248 IPR036638 GO:0046983
Vra7g3258 335 MobiDBLite consensus disorder prediction 21 53 - -
Vra7g3258 335 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 321 - -
Vra7g3258 335 PANTHER OS05G0228400 PROTEIN 17 321 - -
Vra7g3258 335 MobiDBLite consensus disorder prediction 26 45 - -
Vra7g3258 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 247 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3258 Vra-Chr7 52126972 52130529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3258 1 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.056 8.59e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3258 - - gmx:100785156 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3258 7 52126972 52130529 Vra7g3258 7 52126972 52130529 ECH
Vra7g3258 7 52126972 52130529 Vra1g0512 1 6122297 6126320 PCT