Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3257 ATGAAGAGCGGTGCTGAAGGTGGCGGCAGGGAGAACATAAGGGAGGAGATAACGCGAACGAATCTGTTGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGAAGCATCTGTTGAATTATTGAGCCCCAGTTCCAGCAGAAGATCTTCCCAGGAACCATTTTATCCTCAAAGAGTCTTTTCCAGAATTCTCAAACCCAAAAATCCTTCAAAATCTTGGACAACGACAGTCTATTTAAACTCAACCGCTGACGCCGATTTTTCTTCAGACGAGAGTTTGGTTAGTTCTTCTTCAGATTCTGAGGTAGAAAATGAGGAAAAAAACAAAATTGCATTGTTGGAGCCTCAACAAAGCCAAATTCAAGAACAAATGCAAACCATCTTCAAACAATATAGTGGTTCACCAGATTATCCTCCTATGGCCGACTTCGATAACCCGCTGCATGAAATTGGGAAACATGCACCCCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACGTATGAACGTAAAGCTATCGAGGAATGGTTCAACAGAGGGAACTTAACCTGTCCCATCACTCGCCAGAAGCTGCAAAACACTCAGCTTCCCAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGATCGCAACCCCCATTTGGTCCAACCGCCGTATGAGAGTCCATACGAAGATACCGAGGCAGTTGTGCAGTCAACAACGGCTTCAACTTCTCCTAATAGCGTTATAACCCAAGCCACAGTTGACGGGATGATGAGTGAGTTACGCTGTGCCATCAATAATCTGTACATGTCAGAGGTTCTCAAGGAATCGGAAATGGCCGTGCTTCAAGTTGAGAAGTTCTGGAGAGGAGTGAATCTTGGAGTGGATATCCATAGAATGTTAGTAAAACCTGCGATAATCAATGGATTTATGGAGATTCTTTTCAATTCTGTGGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTAGCCGAGATGGGGTCAAGGGACAACGCTGTTATCGAGACTCTAACCCGTGTGAAGACTGATGTAGAATGTATCATGGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGTTGTTGCATCTGCTAAACCCTCCCATCACGAGTCTTGCGGAGATGGCCATAGTGGAGTCTCTCATAACGGTTTTGAATACGAAGGAGGAAGAATTGGTTACGATGTGTTTGAAGCCAAAAACAGCTGCAGTGCTTTTACTTGCCAGGATAACTGGAAGCAGTGAAGAGATAATTGCATCATCGGTTGTCAATACCCTTTTCTCTGAAAATGCAATTGGAACTATTGTCAGCAGTTTTGGAGCTGACTCGGCAAAGGAGAGGATTGCTGCAGTAGAGATCTTATTGAGATGCATGGAAGAAGATGGGACTTGCAGAAAGAACATTGCTGATAAAGCAGAGTTGTCTCCACTTATGGAAACCTTAATCGGTGCAGATGATGGAGAGCGTTTTAAGATTATTCAGTTTTTTGCTGAGTTGGTCAAATTAAACAGGAGGACATTCACTGAACAAATTCTCCATATTATAAAGGAAGAAGGACCATTTAGCACAATGCATACTCTTCTTATTTATTTGCAGGCAGCTCCTCAAGATCATTGTCCAGTTATGGCTGGCCTCTTACTCCAACTTGATCTTCTGGATGAGCCAAGAAAAATGAGCGTATACCGTGAAGAGGCTATGGATACTCTTATTGCATGCCTGAGAAACACAGATTTCCCCGTTACCCAATTAGCAGCTGCAGATACGATCATGTCACTGCAAGGGAGCTTCGACTTCTTCGGAAACCCTCTATGCAGAGAAGTCCTCCTTAAACGTGCAGGTATTGAGAAAAGTTCCAGAAATCTTGTACTGGTGGGCCATCCGATTAGCAACTCCAGTCCAGAAATTGATATAACTCCAGAAGACGAGAAGGCAGCTGATGATTCGGAAAGAAGAATTGCATATGCTCTAGTTAGCCATGAATTTGGCACTATTTTTGAGGCTTTAGCTGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAGCATGCTTTATGTCAGCTACCTGGCTCACGTACATGTTGACCATTCTACCGGATACAGGCATACAAGTAGCAGCTCGTGCTTGCTTGCTGAAGCACTTCATATCTAAATTAAATTCGGCTAGGGATGTAGAAGACAGAATCCTCTCTATGGTTGCTCTCAATAGCTTTCTTCATTTCCCTGAAGGCTTAGGTGATCTAACTCCCTACACTAAGGATATCTTAAGAGCATTGAGAGAGTTGAAGAGATCCTGTCCCTTAGCATCTAAAATGCTAAAATCTCTGGTTGAAGAAAATGAATCTAAAGCGGACATTTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGCGAAAATGGAGAGGTGGTGTCTGTCACATGCTTTAAGGATAAAATATTTTCTGGTCATACAGATGGGACGATTAAGGTCTGGACATTAAAGAATAATTTATTCCATCTGTTGCAAGAAATCCAAGAACATACTAAAGCAGTGACAAACTTGGTGATTTCAGAGTCTGGTGACAGGCTATACAGTGGTTCACTTGACCGAACTTCAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTACAGGTGTATGACATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCTTAGCTTGTTTCATTCCGCAGGGGGCCGGTGTCAAGGTTCAGTCACTGAATGGAGAGTCAAAAGTGTTAAATTCTAGCAAATATGTGAAGTGTTTGGCTCATGTCAATGGGAAGTTATATTGTGGATGTCATGACAGCAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTCAACACTATTCAAAGTGGTTATAAAAGATTACTTGCGAAAGCAAATCCTATTCATGCAATACAAATTCATGGTGAACTTATATATGCAGCTGGTTCTTCCATGGATGGATCTTCTGTAAAGATATGGAACAGTTCCAGTTACAGTATGGTTGGATCACTGCAAACTGGATCAGAAGTGCGGACTATGGCAGTGAGCTCAGGATTGATTTATTTGGGGTGCAAAGGAGGTACTGTGGAAATTTGGGATAAGAAGAAAAGCAGTAAAGTTGACACGTTGCAAATGGGTACCAATTGTAGGGTCAATTGCATGGCTCTAGACAGGAATGAAGAAGTTTTGGTAATTGGAACTTCAGATGGACAAATTCAGGCTTGGGAAATGAATTAA 3294 0.425 MKSGAEGGGRENIREEITRTNLLENGRYNPMWSEREASVELLSPSSSRRSSQEPFYPQRVFSRILKPKNPSKSWTTTVYLNSTADADFSSDESLVSSSSDSEVENEEKNKIALLEPQQSQIQEQMQTIFKQYSGSPDYPPMADFDNPLHEIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVQPPYESPYEDTEAVVQSTTASTSPNSVITQATVDGMMSELRCAINNLYMSEVLKESEMAVLQVEKFWRGVNLGVDIHRMLVKPAIINGFMEILFNSVEPQVLQAAVFLLAEMGSRDNAVIETLTRVKTDVECIMALFKNGLTEAVVLLHLLNPPITSLAEMAIVESLITVLNTKEEELVTMCLKPKTAAVLLLARITGSSEEIIASSVVNTLFSENAIGTIVSSFGADSAKERIAAVEILLRCMEEDGTCRKNIADKAELSPLMETLIGADDGERFKIIQFFAELVKLNRRTFTEQILHIIKEEGPFSTMHTLLIYLQAAPQDHCPVMAGLLLQLDLLDEPRKMSVYREEAMDTLIACLRNTDFPVTQLAAADTIMSLQGSFDFFGNPLCREVLLKRAGIEKSSRNLVLVGHPISNSSPEIDITPEDEKAADDSERRIAYALVSHEFGTIFEALADGMKSRNPELRSACFMSATWLTYMLTILPDTGIQVAARACLLKHFISKLNSARDVEDRILSMVALNSFLHFPEGLGDLTPYTKDILRALRELKRSCPLASKMLKSLVEENESKADIWIHKELIKEDCSENGEVVSVTCFKDKIFSGHTDGTIKVWTLKNNLFHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTSKVWSIGKAAIHCVQVYDMKDQIHNLVVTNSLACFIPQGAGVKVQSLNGESKVLNSSKYVKCLAHVNGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLAKANPIHAIQIHGELIYAAGSSMDGSSVKIWNSSSYSMVGSLQTGSEVRTMAVSSGLIYLGCKGGTVEIWDKKKSSKVDTLQMGTNCRVNCMALDRNEEVLVIGTSDGQIQAWEMN* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3257 1097 Gene3D - 921 1097 IPR015943 GO:0005515
Vra7g3257 1097 Pfam U-box domain 157 227 IPR003613 GO:0004842|GO:0016567
Vra7g3257 1097 ProSiteProfiles Trp-Asp (WD) repeats profile. 1063 1097 IPR001680 GO:0005515
Vra7g3257 1097 SMART Ubox_2 159 223 IPR003613 GO:0004842|GO:0016567
Vra7g3257 1097 Gene3D - 301 797 IPR011989 -
Vra7g3257 1097 Coils Coil 458 478 - -
Vra7g3257 1097 ProSiteProfiles U-box domain profile. 155 230 IPR003613 GO:0004842|GO:0016567
Vra7g3257 1097 ProSiteProfiles Trp-Asp (WD) repeats profile. 854 887 IPR001680 GO:0005515
Vra7g3257 1097 SMART WD40_4 847 886 IPR001680 GO:0005515
Vra7g3257 1097 SMART WD40_4 1055 1095 IPR001680 GO:0005515
Vra7g3257 1097 SMART WD40_4 974 1013 IPR001680 GO:0005515
Vra7g3257 1097 SMART WD40_4 805 842 IPR001680 GO:0005515
Vra7g3257 1097 SMART WD40_4 1016 1052 IPR001680 GO:0005515
Vra7g3257 1097 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1063 1097 - -
Vra7g3257 1097 MobiDBLite consensus disorder prediction 131 150 - -
Vra7g3257 1097 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 1096 - -
Vra7g3257 1097 CDD RING-Ubox_PUB 160 202 IPR045210 -
Vra7g3257 1097 ProSitePatterns Trp-Asp (WD) repeats signature. 1082 1096 IPR019775 -
Vra7g3257 1097 SUPERFAMILY RING/U-box 154 231 - -
Vra7g3257 1097 SUPERFAMILY WD40 repeat-like 825 1096 IPR036322 GO:0005515
Vra7g3257 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Vra7g3257 1097 SUPERFAMILY ARM repeat 314 778 IPR016024 -
Vra7g3257 1097 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 854 887 - -
Vra7g3257 1097 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 1096 - -
Vra7g3257 1097 Pfam WD domain, G-beta repeat 851 886 IPR001680 GO:0005515
Vra7g3257 1097 Gene3D - 798 918 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3257 Vra-Chr7 52114737 52121269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3257 157 223 U-box Gene Family AT1G23030 53.731 4.37e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3257 - - vun:114176884 1979.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3257 7 52114737 52121269 Vra7g3257 7 52114737 52121269 ECH