Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3253 ATGGAGATGGATCCTCCACCAAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCCAAGTATGAGGTCATGGAGCGGGTCGGGTCGGGGGCTTACGCCGACGTCTACCGTGGCCGTCGCCTCTCCGACGGCCTCATCGTCGCCCTCAAGGAAATCCACGACTACCAATCTGCTTTCCGAGAAATCGATGCGTTGCAGCTTCTCCAGGGATTCCCAAACGTCATCGTTATGCACGAGTACTTCTGGCGCGACGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCAACCGTCATCGCTGACGCCGCCAAGGACAACCGGCCCATCCCCCCCGGCCAGCTCAAGCGGTGGATGATCCAGATTCTCTCTGGCGTCGACGCCTGTCATCGCAACATGGTCCTTCACCGTGATTTGAAGCCCTCGAATCTCTTAATTTCCGAAAATGGCCTCCTCAAGATCGCCGATTTCGGACAGGCAAGAATTCTTACGGAGCCTGGATTTGATGATTCTAATAATCATGAAGAGTATTCTAGAGACATTGATAATGAAGATACTAGTACTAATACTCACGATGGAAATGCAACATGCACCACAAGTGACATAAACAGGGAAGATGAAGAGAACGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGGCTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCGGAGCTTTTAACTTTGCAGCCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTCAGTAGAATCATTAGTGTTTTGGGTAACCTTGATGAGAGTGTTTGGGTTGGTTGTTCTAAACTTCCTGATTACGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTATTGAAGCCTGTTTACCAAATAGGTCCCCTGATGAAGTGGCTCTGGTGAAAAAACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCAATGGAGTTGCTTAATGACAAGTACTTTAACGAAGAGCCTCTTCCTGTGCCGATTTCTGAGCTGCCAGTTCCTCTTAACAGAAACGGACAAGATGAGGATTCCCCTGGTGGGTGGGGTGATCTGGATGGAATGGAATCTGATTCTGATTTTGATGAGTTTGGCCCGCTCAATATTACTAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1227 0.4923 MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLIVALKEIHDYQSAFREIDALQLLQGFPNVIVMHEYFWRDDEDAVLVLEFLRTDLATVIADAAKDNRPIPPGQLKRWMIQILSGVDACHRNMVLHRDLKPSNLLISENGLLKIADFGQARILTEPGFDDSNNHEEYSRDIDNEDTSTNTHDGNATCTTSDINREDEENELGCFTSCVGTRWFRAPELLYGSRGYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIISVLGNLDESVWVGCSKLPDYGIISFSKVENPAGIEACLPNRSPDEVALVKKLVCYDPAKRATAMELLNDKYFNEEPLPVPISELPVPLNRNGQDEDSPGGWGDLDGMESDSDFDEFGPLNITRTGTGFSIQFP* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3253 408 PANTHER CELL DIVISION PROTEIN KINASE 13 362 - -
Vra7g3253 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vra7g3253 408 ProSiteProfiles Protein kinase domain profile. 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3253 408 Pfam Protein kinase domain 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3253 408 MobiDBLite consensus disorder prediction 362 394 - -
Vra7g3253 408 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vra7g3253 408 PANTHER CYCLIN-DEPENDENT KINASE 10 13 362 - -
Vra7g3253 408 MobiDBLite consensus disorder prediction 172 191 - -
Vra7g3253 408 Gene3D Transferase(Phosphotransferase) domain 1 109 350 - -
Vra7g3253 408 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
Vra7g3253 408 SUPERFAMILY Protein kinase-like (PK-like) 15 353 IPR011009 -
Vra7g3253 408 MobiDBLite consensus disorder prediction 172 199 - -
Vra7g3253 408 SMART serkin_6 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3253 Vra-Chr7 52100096 52102319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3253 6 408 Core Cell Cycle Gene Families AT4G28980 57.474 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vra7g3253 Pkinase 1.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3253 - - gmx:100801952 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3253 7 52100096 52102319 Vra7g3253 7 52100096 52102319 ECH
Vra7g3253 7 52100096 52102319 Vra1g0516 1 6151908 6154360 PCT