Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3252 ATGGGAGAAGGGGAAGGTGAGGGGAGTGATTGTGCTCCCAAGAATGTTGTGCCCAACGACGTCGTCGCGAATGCGCTTTTGCCGTCTGATGTTCCCGCCAAGAAGCTCGCCAGACAGCTCGATTTCACTGGCTTCGGTGGGATGCCACCGCAGTCGCCGGTGGTTTTGCCGCTGCCGCCTTCTGCTTCTGTCAGGGTTGGGAAACCAGAATCCCCAAAGTCGAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCTACTCCCAAAAAGCAAAAACAGTGCAATTGTAAACATTCAAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGATGGTTGCAATTGTGTAAATTGCTATAACAATGTGGAAAATGAAGCTGCTAGACGAGAAGCGGTGGAAGCTACTTTGGAACGCAATCCAAATGCGTTCAGGCCGAAAATTGCAAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAATTTTGATATTGGGAAAGCACAACAAGGGATGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGTAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCGGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCGTCACCACCAATATCAAAGAAAAGAAAAGGCCAAGAACTCTTATTTGGGTCAACCATTAAAGATCCGTCACTTGGAAGGCTGGGACAACAGGCAAACAATGTCAGAGTTCCTGCACCATCCTCATCCATGTCACCCATTCCAGGTGCTCGTGTTGGACCGGCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCCAAGACATTTACTGACCAGAAAAATTTAATGGACAAGCATGCGGAAGATCACACAGAAACTTCTCTTGCTTCTTCAACTCAAGAGCAATTACCAAACCAAAAGGAAGCTAATGTTGAGAAAGCTATGGCTGATGATGATTGTTTGAGTGCAAACCAGACAGATAAAATCAGCCCAGATAATTCTTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGAACCTTAGCATTGATGTGCGATGAGCAAGACACAATGTTCATGACTTCTGCCTCCCCTATTGGATCAAGGGCTCATGCTTGCAACACATCTTCGCAACCGCCATATGGACAAGGAATGACAGAGGTCTATGCCGAGCAAGAAAAAATTGTATTGACAAAATTTAGAGACTTTCTCAATAGGGTTATCACTATGGGAGAAATAAATGAAACGAAGTGTTCTTCATTAGCTAGAAGTGAATTAGAGAGTGAAAAGGACCCAAACAACAATTGCACTGGAAATAATACCAGTACTGAGACAGCCCATCAGCAGGGAACCACTAATAATGTTGTTGCCAAAGCTGCGACCAACATTACTTCTACATCTTCGTTCCCTGGTGGTAGTCTTATTCCTGAAAAATAG 1653 0.4453 MGEGEGEGSDCAPKNVVPNDVVANALLPSDVPAKKLARQLDFTGFGGMPPQSPVVLPLPPSASVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGSTIKDPSLGRLGQQANNVRVPAPSSSMSPIPGARVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHAEDHTETSLASSTQEQLPNQKEANVEKAMADDDCLSANQTDKISPDNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTSASPIGSRAHACNTSSQPPYGQGMTEVYAEQEKIVLTKFRDFLNRVITMGEINETKCSSLARSELESEKDPNNNCTGNNTSTETAHQQGTTNNVVAKAATNITSTSSFPGGSLIPEK* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3252 550 MobiDBLite consensus disorder prediction 352 414 - -
Vra7g3252 550 PANTHER TESMIN/TSO1-RELATED 60 529 IPR028307 -
Vra7g3252 550 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 176 210 IPR005172 -
Vra7g3252 550 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 90 125 IPR005172 -
Vra7g3252 550 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 60 529 - -
Vra7g3252 550 MobiDBLite consensus disorder prediction 503 521 - -
Vra7g3252 550 SMART CXC_2 173 214 IPR033467 -
Vra7g3252 550 SMART CXC_2 88 128 IPR033467 -
Vra7g3252 550 MobiDBLite consensus disorder prediction 49 81 - -
Vra7g3252 550 MobiDBLite consensus disorder prediction 361 375 - -
Vra7g3252 550 MobiDBLite consensus disorder prediction 495 521 - -
Vra7g3252 550 ProSiteProfiles CRC domain profile. 89 213 IPR005172 -
Vra7g3252 550 Coils Coil 123 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3252 Vra-Chr7 52091005 52097794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3252 9 499 CPP Transcription Factor Family AT4G29000 59.677 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vra7g3252 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3252 - - gmx:100786353 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3252 7 52091005 52097794 Vra7g3252 7 52091005 52097794 ECH