Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3245 ATGACTTCTCTCTCCGTCTTTCCCTCACTCCCATCGCTTCAAAACCCTAACTTCACGCATCCCCGCCTCTCCGATTTCATCTATTTCCCTTTCAATTCCACGCAATCTTTCGCACCACTCTCTCGCCGTAATTTCCTATGCAGAGCTTTCAGAGATCCCGGCGAGGACATCAAAGCGGTCGTCAAGACCGATGACGGCGGCGGCGGAGATGGGGGTGGAGACGGTGGGGGGGACCGGGACTCGGAGAAAAAAGAAGGGCCTTTGCCGGAGTGGTTGAATTTCACTACTGATGACGCCAAAACGGTACTTGCTGCTATCGCAATTTCGCTTGCGTTTCGCACGTTCGTGGCGGAGCCTAGGTACATTCCCTCGCTGTCAATGTACCCTACATTTGATGTTGGCGATAGAATTGTTGCTGAAAAGGTTTCTTACTATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTCAAAAGCCCTCCTGTGCTCCAAGAAGTTGGATATAGTGATGACGATGTTTTTATAAAGCGTGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTCCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAGACTACATTCATGAACCACCTGCATATGAGATGAAACCCACACGTGTACCAGAGAATTACGTGTTTGTGATGGGAGACAATCGCAATAACAGCTATGATTCCCATGTGTGGGGTCCCCTGCCATCCAAGAACATTATAGGGAGATCAGTATTTCGATATTGGCCACCAAATAGAATTGCTGGCACAATTTCTAAGGATAGCTGCAGTGTTGAAACCACGCAGGAGAATGCAGAGACTGCTCTACCTTCTCAATGA 861 0.4762 MTSLSVFPSLPSLQNPNFTHPRLSDFIYFPFNSTQSFAPLSRRNFLCRAFRDPGEDIKAVVKTDDGGGGDGGGDGGGDRDSEKKEGPLPEWLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYIHEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTISKDSCSVETTQENAETALPSQ* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3245 286 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 81 268 - -
Vra7g3245 286 ProSitePatterns Signal peptidases I serine active site. 124 131 IPR019756 GO:0004252|GO:0016021
Vra7g3245 286 PANTHER SIGNAL PEPTIDASE I 81 268 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra7g3245 286 CDD S26_SPase_I 118 250 IPR019533 GO:0004252|GO:0006465
Vra7g3245 286 TIGRFAM sigpep_I_bact: signal peptidase I 100 258 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra7g3245 286 MobiDBLite consensus disorder prediction 59 89 - -
Vra7g3245 286 Gene3D Umud Fragment, subunit A 112 270 - -
Vra7g3245 286 Pfam Signal peptidase, peptidase S26 99 256 IPR019533 GO:0004252|GO:0006465
Vra7g3245 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 115 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra7g3245 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 174 186 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra7g3245 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 218 237 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra7g3245 286 ProSitePatterns Signal peptidases I signature 3. 223 236 IPR019758 GO:0004252|GO:0016021
Vra7g3245 286 SUPERFAMILY LexA/Signal peptidase 113 262 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3245 Vra-Chr7 52041976 52044802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3245 127 257 MADS-box Gene Family AT1G29960 33.333 3.12e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3245 K03100 - gmx:100815810 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3245 7 52041976 52044802 Vra7g3245 7 52041976 52044802 ECH