Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3211 ATGTCAGGAAGTTCATCATCATTCGTCATGCCTACTTCTGTAACTAGATACGATGTGTTTTTAAACTTCAGAAGAGAAGACACTTGTGAAAACTTCATTAGTCACCTTTATGGAGCGCTGCAGAGGAAGCACATTGAAGCATATATTGATTACGAACTACAAAGGTGTGAAGAAATTTCACCTGCAATTCAAACTGCAATAGAAGAATCAAAGATCTATGTCGTGGTTTTCTCTGAAAACTATGCATCTTCAAAGTGGTGTTTGAATGAACTGACTAAGATACTGGATTGTAAGAATAGATATGGAAGGAATGTGATACCAGTTTTCTACAAGGTGGATCCAGCAACTGTCAGGAAACAGGAAGAGAGATACAAAGAAGCATTCGAAGAGCATGAACAGCAGTTTAAGGAAGACATCAGCAAAGTGCAAAGATGGAAGGATGCTCTAACAGAAGCTGCTGGACTCTCCGGTGTTGAAGAAATTATAGAAGATATTTTGAAAAAATTGAATCCTTATTCTATCAGTTACAATCAAGGAATCATCGGCATTGAAAAACATATTGAAGAAATTCGGTTTTTGTTGCGTCTTGAGTCAGAGAATACTCGGATCATAGGAATTTGTGGCATAGGAGGAATAGGAAAAACTACAATTTCTAAGCAATTATATCACAAATTTGCAATGCATTTTGATTCACATAGCCTTATTTTAGATGTTCAAGAAAAACTACAAAGAGAGGGAATACACGACATCATAATAAAATATCAGTCTGAACTTCTAAAGGAAGCACCATCCCATTTATCACATTACAATGAACGGATCAAACGGACAAAGGCCCTCCTCATTCTTGATGATGTGACCGATTCAACTATACTTAGCAAAGTAATGAGAGAGCGTAGCTTTGGGAAAGGCAGTAGAATCATTATGACCAGTAGAGATAGACAAGTGCTAAAGAATGCTGGGGCTGATGATATCTACGAACTTAAGGAGTTGATTTTTCATGATTCTCTAAAACTTTTTAACTTACATGCTTTTAAACAAAATTCTTCAGAAGAAATCACTTACATGGACTTGTCAGTAAAGATGTTGAGATATGCAAAAGGGGTTCCGTTAGCTCTCCAAATTTTGGGTTCATTGTTATATGGCAGACAAAGAGAAGCATGGGAAAGTCAGTTGCAAAACTTGGAGAAGTGTCAAGATCATGATATTTTCAACATATTAAAATTAAGTTATGATGGGCTCCGTGAAGAGGAGAAAAATATATTTCTTGACATCGCTTGCTTTTATAAAGGACACAACGAGATTGTGGTAGGAGAAACACTAAGTGACTGTGGTTTCTCTTCTAAGATTGGAATGGATGTTCTCAAAGATAAATGCCTCATATCTATCTTGGATGGTAGAATTGTGATGCACGATCTAATACAAGCAATGGGTCGAGAAATTGTTAGTAAAGAGTGTCTTCAGCATCCTGGAAAACGTAGTCGATTGTTCAAGGCTAACGAAATTCATGAGATTTTAAGAAATAACAAGGGTGTGCCCTTAAACTTTCAAAGTCTCAAGAAGCTCTGTATAATAGATCTCTCAAATTGTTCTTCCCTTACAATCTTTCCATTTGACCTTTCTGAGATTAAATTCCTAAACAAACTTCGTCTCAGTGGTTGCTCAAAATTGAAAAATTTCCCCGAGATTGAGAACACGATGGAATATTTAGCGGTTCTCCTCTTAGACGCGACAGCCATACAGGCACTACCTTCATCCTTGTGGCATTTGGTAGGACTTCAAGAACTGAGTTTGAGCCGTTGCTGGAATCTTGAGATTATTCCATCTTGCATTGGAAGGCTCACCAGACTATGCAAATTAGACCTTGCCTACTGTCTATCACTTCAAACTTTTCCAAGCACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTGAGTGAATGCGTTAAGTTGAGAACCTTCCCAGAGATCACGGAGCCGGCACAAACTTTTACTCAAATTAACTTAACAGATACGGCTGTTAAAGAACTCCCTTCCTCATTAGGCAATTTGGCTAAGCTTCGATCCCTAAAGCTCAACAGGTGCACTGATCTCGAGTCACTTCCAAACTCCATTGTTAATCTAAAGCATCTCTGTAAACTTGATTGTTCGGGGTGTGCCAAATTAACAGAAATCCCAACACACATTGGTAGCTTGTCTTCATTAATGGAACTGTCACTGAGTAATAGTGGAATCGTGAACCTTCCCGAGAGCATGGCTCATCTTTCAGGCTTGAAATCGCTTGATTTAAGCGATTGCAAAAAGCTTGAATGCATTCCACATATTCCCCCATTCCTAAATCAACTGGTGGCATTGGATTGCACATCCATTAGAGGAGCGATGTCAAATTCTCCTGTGCGAAACCTCTCAAACTCCAAAGACAGTTTCTTCCGATTTCATTTGACCAATTCTCAACAACTGGATTCAGGTGGTCGTGCAAACATTGAGGAGGATGCAAGGCTTAGGATGAGCAACGATGCATATGAGTCTGTGTGCTTCTGTTTTCCAGGAACTGCAGTTCCTCATTGGTTTCCTTTTCGCAGCGAAGGACCTTCACTGACTATAAATGAAGATTTAAGTTTCTGCAGCGATGATAGGCTCATTGGTTTCGCTTTGTGTGTGGTTTTTGAAGTGTTAGATACGAATGATATTAAAGGCAGATGCAGTTCTTTTGTTTACAGCCTAAAATTTGAATGTGATGATGATGGCACACAGATAATTCCAAATAATGATGTGTTAAACACCTATTTCACATGGCATTTAAGTGACAGAGTCCTTGATAAAGATCACACATTCATGTGGAAATTTAACTTGGAGAGCCTAAGGAGGAGAGGCATGAACCTTAGGAGGCTCAGTGATGCTCGCAGCTTCACTTTTGAGATCAGTATATGTACAAGTAATTATGATAATCTGTGGCCAGATTATATTACAGTATTGACAATAAAAGAATGTGGAGTGTGCCCTCTTTATAGAAGCGGAAGCAGTGTTGGAGAGTCTTCAAAGGAAACAAAGGAAGATAGGAAGAGGAAGGCATAA 3072 0.3861 MSGSSSSFVMPTSVTRYDVFLNFRREDTCENFISHLYGALQRKHIEAYIDYELQRCEEISPAIQTAIEESKIYVVVFSENYASSKWCLNELTKILDCKNRYGRNVIPVFYKVDPATVRKQEERYKEAFEEHEQQFKEDISKVQRWKDALTEAAGLSGVEEIIEDILKKLNPYSISYNQGIIGIEKHIEEIRFLLRLESENTRIIGICGIGGIGKTTISKQLYHKFAMHFDSHSLILDVQEKLQREGIHDIIIKYQSELLKEAPSHLSHYNERIKRTKALLILDDVTDSTILSKVMRERSFGKGSRIIMTSRDRQVLKNAGADDIYELKELIFHDSLKLFNLHAFKQNSSEEITYMDLSVKMLRYAKGVPLALQILGSLLYGRQREAWESQLQNLEKCQDHDIFNILKLSYDGLREEEKNIFLDIACFYKGHNEIVVGETLSDCGFSSKIGMDVLKDKCLISILDGRIVMHDLIQAMGREIVSKECLQHPGKRSRLFKANEIHEILRNNKGVPLNFQSLKKLCIIDLSNCSSLTIFPFDLSEIKFLNKLRLSGCSKLKNFPEIENTMEYLAVLLLDATAIQALPSSLWHLVGLQELSLSRCWNLEIIPSCIGRLTRLCKLDLAYCLSLQTFPSTIFKLKLRKLDLSECVKLRTFPEITEPAQTFTQINLTDTAVKELPSSLGNLAKLRSLKLNRCTDLESLPNSIVNLKHLCKLDCSGCAKLTEIPTHIGSLSSLMELSLSNSGIVNLPESMAHLSGLKSLDLSDCKKLECIPHIPPFLNQLVALDCTSIRGAMSNSPVRNLSNSKDSFFRFHLTNSQQLDSGGRANIEEDARLRMSNDAYESVCFCFPGTAVPHWFPFRSEGPSLTINEDLSFCSDDRLIGFALCVVFEVLDTNDIKGRCSSFVYSLKFECDDDGTQIIPNNDVLNTYFTWHLSDRVLDKDHTFMWKFNLESLRRRGMNLRRLSDARSFTFEISICTSNYDNLWPDYITVLTIKECGVCPLYRSGSSVGESSKETKEDRKRKA* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3211 1023 Pfam TIR domain 17 169 IPR000157 GO:0007165
Vra7g3211 1023 Pfam C-JID domain 847 1004 IPR045344 -
Vra7g3211 1023 Gene3D - 330 414 IPR042197 -
Vra7g3211 1023 Gene3D Ribonuclease Inhibitor 498 658 IPR032675 -
Vra7g3211 1023 PRINTS Disease resistance protein signature 203 218 - -
Vra7g3211 1023 PRINTS Disease resistance protein signature 272 286 - -
Vra7g3211 1023 PRINTS Disease resistance protein signature 365 379 - -
Vra7g3211 1023 PRINTS Disease resistance protein signature 752 768 - -
Vra7g3211 1023 ProSiteProfiles TIR domain profile. 15 169 IPR000157 GO:0007165
Vra7g3211 1023 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 157 IPR035897 -
Vra7g3211 1023 Pfam NB-ARC domain 184 400 IPR002182 GO:0043531
Vra7g3211 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 424 IPR027417 -
Vra7g3211 1023 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 592 920 - -
Vra7g3211 1023 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 517 607 - -
Vra7g3211 1023 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 513 - -
Vra7g3211 1023 SUPERFAMILY L domain-like 468 789 - -
Vra7g3211 1023 Gene3D - 175 324 IPR027417 -
Vra7g3211 1023 Gene3D - 12 174 IPR035897 -
Vra7g3211 1023 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 592 920 IPR044974 GO:0006952
Vra7g3211 1023 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 513 IPR044974 GO:0006952
Vra7g3211 1023 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 517 607 IPR044974 GO:0006952
Vra7g3211 1023 Coils Coil 117 137 - -
Vra7g3211 1023 SMART till_3 16 155 IPR000157 GO:0007165
Vra7g3211 1023 Gene3D Ribonuclease Inhibitor 659 774 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3211 Vra-Chr7 51703948 51708635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3211 12 767 WRKY Transcription Factor Family AT4G12020 29.844 3.76e-77 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3211 - - vra:106770428 1583.16