Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3200 ATGGCTGAAATTTCTTCTACTGACTTCCCTGACTTCCCATCAATTCTCAATGTTCTTGTCATTGACAGTGAACTCAATGTTCTTGATTTCATCAAGAAAACATGCAACCAGTATTCTTATCAAGTTATGGCATGTTCTGAATCTATAAGTGCTGTCAATATTTTGCGCGAAAGAAAAACGCATATTCATTTAATACTCATTGAAGTTGATATGCCTGTCATGGATGGCTACGAATTCATGCTATTTGTCAATAAAGAAGGAATTAACGTTCCTGTCATAGTGATGTCTCATGATGATTCTAAGCCTTGTATAATGAAGACTGTTCAGCTTGGAGCTTGCGATTATTGGAAGAAACCCTTGAATGAGGATATTATGATCAAGAATATGTGGACACATGCTTTTAGGAAGTTTTTAGGGGAAGATAGGACCCAAAAAAATACTGATGAGAATGATAAAACAAGAGAAGATGCTTCATCAATTGTTGATAGGAACAAAAGTAATTTCAGAGAAGTTGATGAATCAGAAAATAGTAATCCACTTGCCACAGGGAAGGATCGCATAGTATGGACACCAGAACTGCATACTAAATTTCTTGATGCTGTTAAAAGACTTGGACCCGAAAATGCCGTGCCAAAGAAAATTCTGGAAGCTATGAATATGCCTAACTTGAAAAGAGGACATGTTGCTAGTCATCTGCAGAAATACAGAAAATTTTTGAAAGAGGAGGAAGAAAAACAGCAACAACCGAATGAACCGAATGAGATTTCAGGTAATAAAAAACCAAGGGTGCATGCATCAGGAGAAAACAACTTGCAACCTTTGACACATCCTGGTCTGACATGTAACATGGGACCAACAAGAGAGAAACCCTATGATTCAAATGTACAAGTTGCTGAACATTTTCATGCAGAACCAACTTTGGTACATGATCTTTCTTATCCTTTGGCAACGTTTCCTAATATTTCAATCACAAACAATTTTCCTCAGTCTTCTGGATATGGATATGGACTAAATAATAGGCAGCAGCCAATGATGCGTCCTCAAATTCCTTCAATCAACTTGCAGCCATCCTCCATTATTATTTCTGATAATTCAGCTTCTGCTCCCCAGAATTACAACTTTCGCATGAACATGCCACCTCAATCAATACATAGAGCTTCTATGTATTACCCACAGCCTCAAAATGCAGGTTTCTCAAATGGTGTTGTGAGATCTTTTGCTGCCTCCACAGATATTGATGATCAAACAATCAAGAAGCAGCTAAATTCTATGAACAATGGCCATCACAAGCCCTGA 1296 0.3765 MAEISSTDFPDFPSILNVLVIDSELNVLDFIKKTCNQYSYQVMACSESISAVNILRERKTHIHLILIEVDMPVMDGYEFMLFVNKEGINVPVIVMSHDDSKPCIMKTVQLGACDYWKKPLNEDIMIKNMWTHAFRKFLGEDRTQKNTDENDKTREDASSIVDRNKSNFREVDESENSNPLATGKDRIVWTPELHTKFLDAVKRLGPENAVPKKILEAMNMPNLKRGHVASHLQKYRKFLKEEEEKQQQPNEPNEISGNKKPRVHASGENNLQPLTHPGLTCNMGPTREKPYDSNVQVAEHFHAEPTLVHDLSYPLATFPNISITNNFPQSSGYGYGLNNRQQPMMRPQIPSINLQPSSIIISDNSASAPQNYNFRMNMPPQSIHRASMYYPQPQNAGFSNGVVRSFAASTDIDDQTIKKQLNSMNNGHHKP* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3200 431 MobiDBLite consensus disorder prediction 144 172 - -
Vra7g3200 431 CDD REC_typeB_ARR-like 18 134 - -
Vra7g3200 431 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 373 IPR045279 GO:0009736
Vra7g3200 431 SMART REC_2 16 129 IPR001789 GO:0000160
Vra7g3200 431 Gene3D - 14 156 - -
Vra7g3200 431 Pfam Myb-like DNA-binding domain 189 236 IPR001005 -
Vra7g3200 431 MobiDBLite consensus disorder prediction 144 183 - -
Vra7g3200 431 MobiDBLite consensus disorder prediction 263 279 - -
Vra7g3200 431 MobiDBLite consensus disorder prediction 241 288 - -
Vra7g3200 431 Gene3D - 181 241 - -
Vra7g3200 431 SUPERFAMILY CheY-like 16 133 IPR011006 -
Vra7g3200 431 ProSiteProfiles Response regulatory domain profile. 17 133 IPR001789 GO:0000160
Vra7g3200 431 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 184 237 IPR006447 GO:0003677
Vra7g3200 431 Pfam Response regulator receiver domain 18 127 IPR001789 GO:0000160
Vra7g3200 431 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 10 373 - -
Vra7g3200 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 240 IPR017930 -
Vra7g3200 431 SUPERFAMILY Homeodomain-like 183 241 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3200 Vra-Chr7 51635314 51636965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3200 12 241 Response Regulator Gene Family AT2G25180 36.364 1.28e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vra7g3200 Response_reg 2.7e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3200 - K14491 vun:114178133 526.939