Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3161 ATGCCAGGCTTCACCATTAAGATCACTCAGGCCTTTTCATCCAGCCATCCAACTATGACCACCCCTTCCTCCTTCCTTGCATCCATACTCGCCCTTGCTTTCTTCTTAGCAACTTTGCCACAATCCTACTCTCAACAACAAAACAACACCTACTCCATTTGCAGCCAATCTTTCAGTTGTGGAACTCTCACAAACATATCCTATCCTTTCTGGGGAGGGAACCGACCCCAGTTTTGTGGCCGCAATGGCTTCAACCTCACCTGCATGGATAACCGAAACACTTCGCTTCAAGTTGGTTCCATGAACTTCCATGTACTACACATCAACCAAACGGCTTCCACCATGAGAATGGTGCGAACAGACCTTGTCTATGATCGCTGCTCTTCCAATTTCACCAACACTTCTCTCAGTTCCAGTCCCTTCTCTTTCCTCCCCACCGTCCAGAATGTCACTGTATTCTACGATTGCCCCTCTCAGGATTCTGTCGGGGGAAACTCCTTTACGTGTCAGAATGATACTAATAAACACGCTTTCTATGTGGTCAATGGAACTCAGCTGAGGCAGTTCCCGGGCCTTCAGAACTGCGGGGTTAGCGTTCTGGTGCAAGTTTCAGAGGGTGTTGTTTGGGATTCTGGGAACGGGATTGAGCCGCTGAAGAAAGCGTTGGATCAAGGGTTTGATGTGAAGTTTGATGCAGAGTGGAGTTCTCAGTGCACAGCATGCAGGGATTCTGGAGGAGCATGTGGAACGAATGAGAATGATTCCGATCAGTTTTCTTGTTATTGCTCGGGTGGAACTCGAGGTTCAGTGTGCTCTACTCACGAAAGTAGCAGGAATAGCAGAGTGTTGAAGCTGGTTTTAGGTTTCGTCGGTACTGGATTTGCACTACCACTAATCGCTGTGATCATATGCCGCAACAAAGCTAGAATTTGGAAATTTATATTAATACAATTGGGCAAGATCAAAAAGAATGATCGAATTATAGAAGCCTTCCTTGAAAGCCAAGGTTCTATGGGTATAAAGAGATACAGTTTCTCTGATGTTAAGAAAATGACCGACTCCTTCAAAATTAAACTGGGGGAAGGTGGTTATGGATCTGTGTACAAAGGAAAGTTACTCAACGGTTGTTCGGTGGCAGTGAAGATACTGAACGAATCAAAGGAGAATGGCGAAGAGTTTATCAATGAGGTTGCTAGCATAAGCAAAACATCTCATGTTAACATTGTCTCTCTCCTTGGATTCTGCCTAGATGGAAGCAGAAAAGCCCTCGTGTATGAGTTTATGTCCAATGGTTCACTTGAGAAGTACATTCACAAGAAATCAGCAGACAAAAATAAAACAACTTCTCCACCCTTGGGTTGGGACAGGTTGAACCAGATTGCAATAGGCATAGCTCGAGGACTTGAGTATTTGCATAAAGGATGCAACACTCGGATTCTGCATTTTGACATCAAGCCACATAACATCCTTTTGGACGAAACTTATCGCCCAAAGATATCAGATTTTGGACTTGCCAAGCTGAGCACAATAGATGAAAGCATTATATCAATGTCAAATGCTAGAGGGACAGTAGGGTATGTGGCTCCTGAAGTGTTCAATAAAAGTTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTATGGAATGATGCTACTAGAAATGGTTGGAGGACAGAAGAACATCAACGTTGAAGCTAGTCGATCAAGCGAACTATATTTCCCACACTTGGTTATTTACAAGAAGCTTGAGCAGGGCAATGATCTGGGACTTGATGGGATATTGTCTGGTGAGGAGAATGAAATAGCAAAGAGAATGACTATGGTGGCTTTGTGGTGCATTCAGACAATTCCTTCTCACAGACCTACCATAAGTAGAGTGATTGACATGTTGTTAGGTAGTGCGGATTCCTTGGAAATGCCACCAAAACCTTTCCTCTCTTCTCCTCCAAGATCAAAAGATTTTTCCACTGCAATGTCCCAATCATTTGATAGTCTCTCATGCAGCTCATAG 2013 0.4391 MPGFTIKITQAFSSSHPTMTTPSSFLASILALAFFLATLPQSYSQQQNNTYSICSQSFSCGTLTNISYPFWGGNRPQFCGRNGFNLTCMDNRNTSLQVGSMNFHVLHINQTASTMRMVRTDLVYDRCSSNFTNTSLSSSPFSFLPTVQNVTVFYDCPSQDSVGGNSFTCQNDTNKHAFYVVNGTQLRQFPGLQNCGVSVLVQVSEGVVWDSGNGIEPLKKALDQGFDVKFDAEWSSQCTACRDSGGACGTNENDSDQFSCYCSGGTRGSVCSTHESSRNSRVLKLVLGFVGTGFALPLIAVIICRNKARIWKFILIQLGKIKKNDRIIEAFLESQGSMGIKRYSFSDVKKMTDSFKIKLGEGGYGSVYKGKLLNGCSVAVKILNESKENGEEFINEVASISKTSHVNIVSLLGFCLDGSRKALVYEFMSNGSLEKYIHKKSADKNKTTSPPLGWDRLNQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLSTIDESIISMSNARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGQKNINVEASRSSELYFPHLVIYKKLEQGNDLGLDGILSGEENEIAKRMTMVALWCIQTIPSHRPTISRVIDMLLGSADSLEMPPKPFLSSPPRSKDFSTAMSQSFDSLSCSS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3161 670 ProSitePatterns EGF-like domain signature 1. 260 271 IPR000742 -
Vra7g3161 670 Gene3D Phosphorylase Kinase; domain 1 329 427 - -
Vra7g3161 670 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Vra7g3161 670 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 665 IPR045874 GO:0004672
Vra7g3161 670 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 15 665 - -
Vra7g3161 670 SMART serkin_6 353 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3161 670 Pfam Protein kinase domain 358 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3161 670 Pfam Wall-associated receptor kinase galacturonan-binding 54 119 IPR025287 GO:0030247
Vra7g3161 670 MobiDBLite consensus disorder prediction 642 670 - -
Vra7g3161 670 SUPERFAMILY Protein kinase-like (PK-like) 333 631 IPR011009 -
Vra7g3161 670 Pfam Wall-associated receptor kinase C-terminal 170 264 IPR032872 -
Vra7g3161 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vra7g3161 670 MobiDBLite consensus disorder prediction 650 670 - -
Vra7g3161 670 ProSiteProfiles Protein kinase domain profile. 353 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3161 670 Gene3D Transferase(Phosphotransferase) domain 1 428 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3161 Vra-Chr7 51333544 51337024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3161 28 644 Receptor kinase-like Gene Family AT5G38260 40.566 2.33e-144 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra7g3161 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3161 - - vra:106766588 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3161 7 51333544 51337024 Vra1g0627 1 7232490 7295785 PCT
Vra1g0624 1 7185309 7194002 Vra7g3161 7 51333544 51337024 PCT