Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3160 ATGTTCATCAAAATTGCACTTGTTTGCTTTGTTTCTACCCTGTTTCTCTTCTTCACCAATACCTCTGCCATCCACAACACATCATTCTCACCAACATGCCTTACTCAACGCTGCTCATCTGGACCTAACATCAGCTACCCTTTTTGGCTTTCCCTTACTGACCAACTCTGCGGTTACCATGAACTTGGCCTTCTCTGTAGTGGCGGCGTCACAATATTTTCTCACATAGGATTATACTATACGGTACAAAATATAGACTATGAGAACCATAGCCTCAAGCTGCTGGATCCTGACACTTTCAACCAAACTTGTCCAAAGGCACTTCACGCTGTTCCCTTAGGCAACCTACCGCTTACTCACTCCCCCTTGAACTTAAACCTTAGCTTTTACTACAACTGCACTAACTACCCTTCTGGTGTGCCTTCTATCCAGTGTCTCCGTTCTGGGGCAAACCAGTCTTTTGTGTTTGTGTCGGGGAACGAGGCCAGAGGTTTTGACTGGTCCGGGAACTGTGAGGAAAAGATTGTGGTCACAGTGATGAAGGATGCGATTACAAGTGACGGTGACTTGATAAGCCAGTTTCCGAGTGCCATGGATAAAGGGTTTGTTCTTGAGTGGCACACTGCTTCGTATTGCCTTCAGTGCGAGGCTAGTGATGGAGTCTGCGGCTACAGTAACCCCGAGAAGAAGGTCCTATGTTTCTGCAAGGATGGAAGTACAAAAGACACTTCGTGTTATGCAGGGGGAAGCAGTTCTGGTTTGTCAAGATTAATTATAGGTTTTATTGTAGCTGGAGGAACTGGTGCACTGCTGACATGCGTCGTAATTTACATTTTTGGAAGAAAATTGTCACCAATTTTGTCAGACATTCGGCAGGCGAGAAAGATTGATCGAGACATTGAGGCTTTCATCAGAAATAATGGGCCACTTCCCATAAAAAGGTACTCATATTCAGATATCAAGAAAATGACCAATTATTTTGAGTCCAAACTGGGACAAGGTGGTTATGGTCAAGTTTATAAGGGAAATCTATGCAACAAATCTCCCGTGGCTGTGAAGCTACTGAATGCTTCCAAGGGAAACGGGGAAGAATTTATCAACGAGGTTATAAGCATCAGTAGAACATCCCATGTAAATATCGTTAATCTCCTTGGTTTCTGTCTTGAAGGCAAGAAGAAGGCTATTATATACGATTTTATGCCCAATGGATCACTTGAAAAGTATATTCACAACAAGAATTTGGAAACTGACCCACCTTTGAGTTGGCAAAGGCTACACCACATTGCTGAAGGAATAGCCAAAGGATTGGAGTACTTGCACAGAGGCTGCAACACTAGGATATTACATTTTGACATAAAACCAAGCAACATTCTTTTGGACAAAAATTTCTGTCCTAAAATCTCTGATTTTGGGATGGCCAAGCTCTGCTCAAACACACAAAGTATCATATCTATGTATGGTGCTAGAGGGACAGTTGGGTACATAGCTCCAGAGGTGTGGAACAGAAGCTTTGGAGGGGTTTCGTATAAATCTGATGTTTATAGTTATGGAATGATGATTTTGGAAATGGTTGGAGGAAGGCAAAATATCAGCATTGAAGCAAGTCATTCAAGTGAGACATATTTTCCCCATTGGATATACAAGCACGTTGAGGTGGGAAAAAATTTGGCATGGCATGAAGGTATGATCCCAGAGGAAAATGAAATTTGTAAGAAAATGATTATTGTGGGATTGTGGTGCATACAGACAATCCCTTCTGACAGGCCTGCTATGAGTCGGGTGGTTGAAATGTTAGAAGGAAGCACGGATCAATTGCAAATTCCACCCGAGCCATTCATATTTAGTCCTATGAAAACTGAAGTGGATATTTGCACCACTAGTAGCAGCGATTGA 1893 0.4253 MFIKIALVCFVSTLFLFFTNTSAIHNTSFSPTCLTQRCSSGPNISYPFWLSLTDQLCGYHELGLLCSGGVTIFSHIGLYYTVQNIDYENHSLKLLDPDTFNQTCPKALHAVPLGNLPLTHSPLNLNLSFYYNCTNYPSGVPSIQCLRSGANQSFVFVSGNEARGFDWSGNCEEKIVVTVMKDAITSDGDLISQFPSAMDKGFVLEWHTASYCLQCEASDGVCGYSNPEKKVLCFCKDGSTKDTSCYAGGSSSGLSRLIIGFIVAGGTGALLTCVVIYIFGRKLSPILSDIRQARKIDRDIEAFIRNNGPLPIKRYSYSDIKKMTNYFESKLGQGGYGQVYKGNLCNKSPVAVKLLNASKGNGEEFINEVISISRTSHVNIVNLLGFCLEGKKKAIIYDFMPNGSLEKYIHNKNLETDPPLSWQRLHHIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGMAKLCSNTQSIISMYGARGTVGYIAPEVWNRSFGGVSYKSDVYSYGMMILEMVGGRQNISIEASHSSETYFPHWIYKHVEVGKNLAWHEGMIPEENEICKKMIIVGLWCIQTIPSDRPAMSRVVEMLEGSTDQLQIPPEPFIFSPMKTEVDICTTSSSD* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3160 630 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Vra7g3160 630 Gene3D Transferase(Phosphotransferase) domain 1 400 608 - -
Vra7g3160 630 ProSiteProfiles Protein kinase domain profile. 325 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3160 630 PANTHER RUST RESISTANCE KINASE LR10-RELATED 14 628 IPR045874 GO:0004672
Vra7g3160 630 Pfam Wall-associated receptor kinase C-terminal 145 238 IPR032872 -
Vra7g3160 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vra7g3160 630 SUPERFAMILY Protein kinase-like (PK-like) 306 599 IPR011009 -
Vra7g3160 630 Pfam Protein tyrosine and serine/threonine kinase 327 598 IPR001245 GO:0004672|GO:0006468
Vra7g3160 630 PANTHER - 14 628 - -
Vra7g3160 630 Gene3D Phosphorylase Kinase; domain 1 291 399 - -
Vra7g3160 630 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Vra7g3160 630 SMART serkin_6 325 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3160 Vra-Chr7 51330309 51333092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3160 35 613 Receptor kinase-like Gene Family AT5G38260 41.333 6.04e-141 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra7g3160 PK_Tyr_Ser-Thr 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3160 - - gmx:100781977 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3160 7 51330309 51333092 Vra7g3160 7 51330309 51333092 ECH
Vra7g3160 7 51330309 51333092 Vra1g0624 1 7185309 7194002 PCT
Vra1g0619 1 7163790 7168073 Vra7g3160 7 51330309 51333092 PCT