Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3159 ATGGCCGCCAAACGGTTTTTGGATGATTCTGATCAAGATAACAATGGTGATAAACGGATGAGACCTACTTCAAGACCTTCTTTTGCTTCGGTAATAGGAGAAGTCGTCATGGTCAAGAACTTGCAGAACCTTTTCTCAGGCTTGGAACCCTTGCTTAGGAGAGTGGTGAACGAAGAGATGGAGCGAGTGATGGGGCATTGTGTGCCGCGTTCGATAACCAGGTCTCCTTCGTTGAGGATCCAAGCATTGGAGCAACCGACGAGCTACGAACTCATGTTCGAGAAGAAGCTAATGCCAACTATATTCACAGGAAGCAGAATAGTTGATACAGATGGGAACCCCCTCCGTGTTGTTCTTGTTGACAAAAGCGGTGGTCAGACGGTTCGCACGAGTCTCCCCCACCCCATCAAGCTAGAAATCGTGGTGCTCGATGGAGATTTTCCTTCCAACAGTGATAACAACGAGTCGTGGACGAGTGAGGAACTCAACAACCGCATAGTGAAGGAGAGAACGGGAAAGAGGCCGCTGCTCACTGGAGAATTGAATCTGACCATGAGAGATGGAATTGCACCAATTGAAGACATTGAATTCACTGATAATTCCAGTTGGATAAGAAGCAGAAAGTTCAGAGTTGCTGTTCGAGTTGTTCCTGGGACTAATCAAACTGTTGGAATTCGTGAAGGCATGACCGAACCATTTATCGTCAGGGATCACCGTGGTGAATTGTACAAGAAACATCACCCACCCATGCTGAATGACGAAGTGTGGCGCCTAGAGAAGATCGGAAAAGACGGAGCTTTCCACAAAAAACTGTCCAGAGAGGGAATAAACAGTGTGCAAGACTTTCTCAAGTTGTCTGTTGTTGATGGCCAGAGGCTCAGAAAGATTTTGGGCGCTGGGATGTCAGAGAGAATGTGGGATGTGACAATCAAGCATGCAAAGACTTGTGAGAAGGGGAAGAAATACTATGTCTTCCGTGGGCAAAATTTTACCATCTTTCTCAATTCCATTTGCCAATTGGTTAAAGCTGAAATTAATGGCCAAGGTTTTCCGGGAAGCGAGTTAAGCAACTTCACAAAGAGCTATATGGAAAAATTGGTGAGAGAAGCATATACTAGATGGAATGACTTGGAGGAAATTGACGAGGCTCTGTTAACCCAAGGTGAGAGCATGGAGCAAATTCCAAACAATCTTGGTGTAGCATATGATCAGAACGAGTACTATGCATCAACACATAATGCACAGATTGGGGGCAGTGAGTGGGGTGTGAATGCAACATTTGGCACAACATCATTTGTGAATAACGCTCTTCCAGCTTTACCTTACAGCTTCTCAGATTCACAATCTGACAGTGATGGTGCCACAAGGTGGAACTAG 1377 0.4553 MAAKRFLDDSDQDNNGDKRMRPTSRPSFASVIGEVVMVKNLQNLFSGLEPLLRRVVNEEMERVMGHCVPRSITRSPSLRIQALEQPTSYELMFEKKLMPTIFTGSRIVDTDGNPLRVVLVDKSGGQTVRTSLPHPIKLEIVVLDGDFPSNSDNNESWTSEELNNRIVKERTGKRPLLTGELNLTMRDGIAPIEDIEFTDNSSWIRSRKFRVAVRVVPGTNQTVGIREGMTEPFIVRDHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLSREGINSVQDFLKLSVVDGQRLRKILGAGMSERMWDVTIKHAKTCEKGKKYYVFRGQNFTIFLNSICQLVKAEINGQGFPGSELSNFTKSYMEKLVREAYTRWNDLEEIDEALLTQGESMEQIPNNLGVAYDQNEYYASTHNAQIGGSEWGVNATFGTTSFVNNALPALPYSFSDSQSDSDGATRWN* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3159 458 PANTHER PROTEIN, PUTATIVE-RELATED 1 452 - -
Vra7g3159 458 Pfam Calmodulin binding protein central domain 250 316 IPR046830 -
Vra7g3159 458 MobiDBLite consensus disorder prediction 1 25 - -
Vra7g3159 458 MobiDBLite consensus disorder prediction 1 20 - -
Vra7g3159 458 PANTHER OS02G0177800 PROTEIN 1 452 IPR012416 GO:0005516
Vra7g3159 458 Pfam Calmodulin binding protein-like N-terminal domain 89 238 IPR046831 -
Vra7g3159 458 Pfam Calmodulin binding protein C-terminal domain 321 380 IPR046829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3159 Vra-Chr7 51322954 51326906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3159 3 411 Calmodulin-binding Proteins AT5G57580 45.433 4.17e-117 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3159 - - vra:106766894 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3159 7 51322954 51326906 Vra1g0618 1 7155336 7159433 PCT