Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3156 ATGGCAACGCCGTTGGACGGAGGAGGAGTGGCGGTGCTCTCGAATTCCGTCAACAAGGTAGACTCCGCCTCGCCTCTCAAGGACGACTTGAAGTGCTCGAAACCGGAGTCTCCGATTTTGATTTTCTTGTTTTTTCACAAAGCGATTCGGAATGAGCTTGAGGCTCTGCACCGGTTGGCCTTGGCATTCGCCACCGGCAACCGCTCCGACATTCAGCCGCTCTCCGAGCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTCCAATGCTGAAGACGAGGTGATATTTCCAGCTTTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTCGAACACAAGGGTGAAAACAACCTTTTTGATCATTTATTTGAGCTTTTAAATTCTTCCATCAATAATGATGAAACTTTTCCAAGAGAGTTAGCGTCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACATATGGCAAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATCGAGAAGTTTTCTCTGGAGGAACAGGCATCCTTAGTTTGGCAGTTCCTGTGCAGTATTCCTGTGAATATGATGGTCGATTTTCTACCATGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCACAGGAGAAGCTTCTTCAGAAGGTTGTTTTCACCTGGATGGAAGGGAGAGGTAGGGCTAACTCAGTTGAAAGTTGTGTAGATCATTCTCAAGTTTTATGCAGTTCTAGGTCATTACCCAATCAGGTTGACAAAGTAAATTGTGCCTGTGAATCTACAACATGTGGAAAAAGGAAATATTCTGGATCTATGATTGACGTTTCTGATGCCACTGGAGCACATCCTATAGATGAAATATTACTTTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGGCCAGAAAGATACAACAATCTGGAGATTTTACTAATCTGTCTGCTTTTAATGAAAGATTTCAATTCATAGCCGATGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTCCCAGCGGTAGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGAAGTTTGATTGAAAATATTCAAAGTGAAGGAGCATCATCCAATTCAGATGTTGAATTTTACTCCAAGNTATGCACACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCACAATGAAGAAGTTCAGGTTCTTCCTCTGGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTTTGTATCAAAGCTTATGTATGATGCCTTTGAAATTAATTGAGCGTGTCCTGCCATNGTTGGTAGGATCTTTTACTGAAGATGAAGCAAAGTTGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTAGTTACTCTATTCTGTGGATGGGGTTGCAAGGCTCGTAGTGAAGGTCAGTGTTTGTCTTCAGGTGCATCAGGTTGCTGTCCTGCACATAAACTCTCTGACATTGAAGAATACATTGATCCATTATCCTGTGCTTGTTCGTCTGCATTATCTAATAGACATTGCTCAGTATTAGCTGAATCAGGAGAGAACAAAAGAGCAGTCAAACGAAACATATTGGAGTTGCACAAAAATGAAGATTCACCAGAAACTTCGGAGACTGAAAGCATTCAGAATCAATGTTGTAGTCCACGGTCCTGTTGTGTGCCAGGTTTGGGAGTAAATAGTAATAATTTAGGGTTGAGCTCTCTCTCTACAGCCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTCTGCCCCATCTATTAATTCCAGTCTGTTCGTATGGGAAACAGAGAGAGGGTCATGCAATGTGGGAAGTACACAAAGACCAATTGATACAATCTTTAAATTCCATAAAGCCATACGCAAAGACTTGGAGTATCTTGATGTTGAATCAGGAAAGCTGCGAGATGGTGATGAGACAATTATTCGGCAATTTAATGGAAGATTTCGACTCTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTGGAATCAAAAGAGGCGCTTCATAATGTGAGTCATTCATACATGCTAGACCATAAGCAGGAAGAAAAATTGTTTGAAGACATTTCCTGTGTTCTTTCAGAGTTTTCTGTCATTCATGAATCTTTACAGATGACACACATGACTGAGAGTTCAAGTGAAAGTAATTTTGAAACCTCTGATGGCAATGGTAGTGATGTCATAAAAAAATATGATGAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTTGATCAGCATCTCTTCAGAGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTTACTGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGAACAACGGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACATCTGCACTTACTCAGGATGAACAGAACAGAATGATGGATACATGGAAACAAGCAACAAAGAACACTATGTTCAATGAATGGCTTAGTGAATGTTGGAAAGAGAGTCCAGTGTCTATAGGACAGGAAGAAGCATCAGATCATAGCACTTCTCGGAGAGGTCAAGAAAGCTTGGGCCACAATGATCCGATGTTCAAGCCAGGTTGGAAAGATATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTATATCGAGACTCAACACTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTATTGACAAGTCGATGGATAGCTGCCCAGCAGCAATCACCTAAAGCAATTTCGGAAGGATCATCTAACAGTGTAGAAATAGTAGGACTCTCACCATCATTTCGAGACCCAGAGAAACCTGTATTTGGGTGTGATCACTATAAGAGAAATTGCAAGCTTCGGGCTGAATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGTGATCACTCGATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCGCTGCCTGAATATACAGCCTATAGGGCCTATGTGCATGACACCTTCATGTAATGGATTTTCAATGGCGAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAACGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACAAGGGCTTGGGATCGATTATTTTCATTGCATGAAATGCAATTGTTGCTTGGGGATTAAGTCAGCATCTCATAAATGTCTCGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGCGATGACTTGTTCACTTCAAGTGCTACGGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACGTGCAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGAACGCTGTCAGGACATACTCTGCCATGACTGCGATCGGAAGGGCTCTTCACGCTTCCACTGGTTGTACCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTTATCAAGTGTGAGACGTCAAACTCCAGCTGCTCTTAG 3702 0.4187 MATPLDGGGVAVLSNSVNKVDSASPLKDDLKCSKPESPILIFLFFHKAIRNELEALHRLALAFATGNRSDIQPLSERYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGENNLFDHLFELLNSSINNDETFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMVDFLPWLSTSISPDESQDLRNCLIKIVPQEKLLQKVVFTWMEGRGRANSVESCVDHSQVLCSSRSLPNQVDKVNCACESTTCGKRKYSGSMIDVSDATGAHPIDEILLWHNAIKKELSEIAVEARKIQQSGDFTNLSAFNERFQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRSLIENIQSEGASSNSDVEFYSKXCTHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPXLVGSFTEDEAKLFQRNMQLAAPATDSALVTLFCGWGCKARSEGQCLSSGASGCCPAHKLSDIEEYIDPLSCACSSALSNRHCSVLAESGENKRAVKRNILELHKNEDSPETSETESIQNQCCSPRSCCVPGLGVNSNNLGLSSLSTAKSLRSLSFSSSAPSINSSLFVWETERGSCNVGSTQRPIDTIFKFHKAIRKDLEYLDVESGKLRDGDETIIRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSEFSVIHESLQMTHMTESSSESNFETSDGNGSDVIKKYDELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNRMMDTWKQATKNTMFNEWLSECWKESPVSIGQEEASDHSTSRRGQESLGHNDPMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQQSPKAISEGSSNSVEIVGLSPSFRDPEKPVFGCDHYKRNCKLRAECCGKLFTCRFCHDNVSDHSMDRKATLEMMCMRCLNIQPIGPMCMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRERCQDILCHDCDRKGSSRFHWLYHKCGFCGSYNTRVIKCETSNSSCS* 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3156 1233 CDD RING-H2_Pirh2 1116 1159 - -
Vra7g3156 1233 Pfam Ring finger domain 1116 1158 IPR001841 -
Vra7g3156 1233 PANTHER CHY ZINC FINGER PROTEIN 24 1232 - -
Vra7g3156 1233 SMART ring_2 1117 1158 IPR001841 -
Vra7g3156 1233 MobiDBLite consensus disorder prediction 880 901 - -
Vra7g3156 1233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1113 1161 IPR013083 -
Vra7g3156 1233 Pfam Hemerythrin HHE cation binding domain 644 807 IPR012312 -
Vra7g3156 1233 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Vra7g3156 1233 Pfam Hemerythrin HHE cation binding domain 295 429 IPR012312 -
Vra7g3156 1233 SUPERFAMILY Zinc hairpin stack 1054 1110 IPR037275 -
Vra7g3156 1233 CDD Hr-like 298 427 - -
Vra7g3156 1233 CDD Hr-like 646 806 - -
Vra7g3156 1233 ProSiteProfiles Zinc finger RING-type profile. 1117 1159 IPR001841 -
Vra7g3156 1233 Pfam Zinc-ribbon 1164 1221 IPR039512 -
Vra7g3156 1233 SUPERFAMILY RING/U-box 1115 1162 - -
Vra7g3156 1233 ProSiteProfiles Zinc finger CTCHY-type profile. 1053 1116 IPR017921 -
Vra7g3156 1233 Gene3D - 1188 1229 - -
Vra7g3156 1233 CDD Hr-like 41 167 - -
Vra7g3156 1233 Gene3D nmb1532 protein domain like 640 880 - -
Vra7g3156 1233 ProSiteProfiles Zinc finger CHY-type profile. 981 1050 IPR008913 GO:0008270
Vra7g3156 1233 Gene3D nmb1532 protein domain like 297 445 - -
Vra7g3156 1233 Gene3D nmb1532 protein domain like 36 187 - -
Vra7g3156 1233 Pfam CHY zinc finger 988 1063 IPR008913 GO:0008270
Vra7g3156 1233 SUPERFAMILY CHY zinc finger-like 981 1044 IPR037274 GO:0008270
Vra7g3156 1233 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3156 Vra-Chr7 51296190 51306083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3156 1 1233 C2H2 Transcription Factor Family AT3G18290 66.032 0.0 1678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3156 K16276 - gmx:100801725 2263.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0616 1 7114917 7124423 Vra7g3156 7 51296190 51306083 ECH
Vra7g3156 7 51296190 51306083 Vra7g3156 7 51296190 51306083 ECH
Vra7g3156 7 51296190 51306083 Vra1g0616 1 7114917 7124423 PCT