Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3152 ATGGCTTTGAATGCCATCTCTTTCGTCAAGGCTCTTCTTCATGTCTCCAACAAAGCTTTCAAAATTCAAACTCCAAGGCTCTTGCGCTCGTTCTCGTATCTGGCCATTGATGTTGAACAACACCACTTGCATACCCCACACGAGAAACCCTTCGACGTTGATACCAATCTTCTCAGTCACATGGTAAGGGACAAGACGCTCGAGTCTCTCACCCAATTTGGAGGCGTCAAGGAACTCGCTTCACTTCTTGAAACCGATGTAAAGGGTGGCGTAAGCGACAGCAAGGATGATCTTGATCACCGAAAACGTGTCTTTGGTGTCAACATTTTCACCAAACCTCCATCTAAAGGCTTTTTTTCTTTTGTTCTTGAATCTTTTAAGGACACCACTATTATCATCCTTTTGGCTTGTGCTTTGCTTTCTCTTGGCTTTGGGATCAAGCAGCATGGATGGAAGGAGGGCTGGTACGATGGAGGAAGCATCATATTGGCGGTTATTCTCGTCATTGTTGTCTCTTCCGTGAGTAACTTCAATCAATCTAGACAGTTCCAGAAGCTTTCTGCCAAGAGTGAGAACATAGGAGTCGAAGTAGTACGAGGTGGTCGACGCCAAAGCGTGTCAATCTTTGATGTGGTGGTTGGTGACATTGCGTACCTGAAGATCGGTGATCAGGTTCCAGCTGATGGAGTGCTTTTGGAAGGGTATTCGTTGAAGGTGGACGAATCTAGCATGACGGGGGAGAGTGATCACGTTCACGTGAACGCTGACACAAACCCTTTCTTGTTATCTGGCACAAAGATCAGTGATGGTTTTGCATACATGCTTGTCACTTCTGTGGGCGTGAACACTGCCTGGGGTGAAATGATGGGTTCGGTAGCGAGAGAGGTTAATGAGGAGACACCTTTGCAAGTGCGTCTTAATAAATTGACTTCTGCTATCGGCAAGGTTGGACTGTTGGTGGCTGCGCTTGTTTTGGTGGTATCTATGATACGTTACTTCACAGGAAGTACCAGAGATGATTTTGGTAACCGAGAATTCGTTGGGAGGAAGACAAAGTTTGATGATGTTATGAATGCAGTTGTGGGGATTGTTGCTGCGGCTGTGACAATTGTGGTGGTGGCTATTCCAGAAGGGTTGCCTCTGGCTGTTACTTTGACTTTGGCTTATTCCATGAAGAAAATGATGCGGGATAATGCTATGGTTAGGAGAATCTCTGCTTGTGAGACAATGGGGTCAGCAACAACAATCTGCACTGATAAAACTGGTACTCTTACGATGAATGAGATGCAGGTGACTGAGGTTTGGGTGGGAAAAGACGAAATAGCAGAAGGTGCGTATTTGGCACCGAGTTTAGTACAATTATTGAAAGAAGGAATTGGATTGAATACCGCAGGAAGCGTTTACCAGACCCAACAAACCTCTCCGCCAGAAATTTCAGGTAGTCCAACTGAGAAAGCATTGCTTTCTTGGGCTGTTGTGGATTTGGGGATGGACATTGATGTTGTGAAGCAGCATTGTGAAATCATTCATGTGGAGACGTTTAACTCTGAGAAAAAGAGAAGTGGGATTTTGATGAGGGAGAAGAGAGGGAGCAACAGGATCGTTACACATTGGAAGGGTGCTGCTGAGATGATATTGGCTATGTGTTCAAGTTATTATGGCCGGACAGGGGAAATCATGATCTTTAATGATGAAGAAAGGGTTCAGATTGAGAACATTGTGAAGGGCATGGCTACCAAAAGTTTGCGATGCATTGCCTTTGCCCAAAAGAGCTCCAATGGGCAGGTCTGTGAAAAGCTTGAAGAGACAGAACTAACACTGTTGGGAATACTTGGATTGAAAGACCCTTGTAGGCCAGGAGTTGAAGCAGCAGTTGAATCATGTAGGAATGCTGGAGTGAAGATCAAGATGATCACCGGAGATAATGTGCACACAGCGAAGGCCATAGCCTCTGAATGCGGGATTCTTGATCCTACTGAAGAATTGGACGAAGATGCTGTGGTTGAAGGGTTTCAATTCAGAAATTACTCGCATGAGGAAAGAATGGAAAAGATTGACAGAATCAGGGTGATGGCCAGATCATCTCCATTTGACAAGCTTCTGATGGTACAATGTTTAAAGCAGAAGGGTAATGTGGTGGCAGTCACAGGTGATGGCACAAATGACGCACCTGCTCTAAAAGAAGCAGATATTGGACTTTCCATGGGAATAGAAGGCACTGAAGTGGCAAAGGAGAGCTCGGATATTGTTATCCTTGATGACAATTTCTCTTCTGTGGTTACAGTAATCAGGTGGGGAAGATGTGTGTACAGAAACATTCAGAAGTTCATTCAGTTTCAGCTGACAGTTAATGTTGCTGCACTGGTCATAAACTTCGTAGCTGCAGTTTCTTCTGGTAAAGTGCCTCTTACAGCAGTCCAGCTTTTGTGGGTAAACCTGATAATGGATACCCTTGGAGCTTTGGCTTTAGCCACCGAGGAACCTACCGATGATCTCATGAAGATGGCACCTGTAGGTAGAGTTGAGCCACTGATAACTAGAGTTATGTGGAGGAACCTGATTTCACAGGCAATGTACCAGGTTATGGTGTTGCTGGTTTTAGAATTCAGGGGAAGATCAATCTTTGATGTCAGTGAGAAGGTGAAGAACACGATTATCTTCAATTCTTTTGTCCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGGAGATGGAGAAGAAGAACATATTTAAGGGACTTGGTAAGAATAGGTTGTTCATTGTAATTGTGAGCCTAACGGTTGGTCTTCAGCTAGTGATGGTCGAGTTTCTGAAAAAGTTTGCCAACACTGAGAGACTGACTTGGGAGCAATGGGGTGTATGTGTTAGCATTGGAGCTTTGTCTTGGCCAATTGGTGTGCTGGTGAAGTGTATCCCAGTTGTTTGCAAGAAGTAG 2934 0.4472 MALNAISFVKALLHVSNKAFKIQTPRLLRSFSYLAIDVEQHHLHTPHEKPFDVDTNLLSHMVRDKTLESLTQFGGVKELASLLETDVKGGVSDSKDDLDHRKRVFGVNIFTKPPSKGFFSFVLESFKDTTIIILLACALLSLGFGIKQHGWKEGWYDGGSIILAVILVIVVSSVSNFNQSRQFQKLSAKSENIGVEVVRGGRRQSVSIFDVVVGDIAYLKIGDQVPADGVLLEGYSLKVDESSMTGESDHVHVNADTNPFLLSGTKISDGFAYMLVTSVGVNTAWGEMMGSVAREVNEETPLQVRLNKLTSAIGKVGLLVAALVLVVSMIRYFTGSTRDDFGNREFVGRKTKFDDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTMNEMQVTEVWVGKDEIAEGAYLAPSLVQLLKEGIGLNTAGSVYQTQQTSPPEISGSPTEKALLSWAVVDLGMDIDVVKQHCEIIHVETFNSEKKRSGILMREKRGSNRIVTHWKGAAEMILAMCSSYYGRTGEIMIFNDEERVQIENIVKGMATKSLRCIAFAQKSSNGQVCEKLEETELTLLGILGLKDPCRPGVEAAVESCRNAGVKIKMITGDNVHTAKAIASECGILDPTEELDEDAVVEGFQFRNYSHEERMEKIDRIRVMARSSPFDKLLMVQCLKQKGNVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFSSVVTVIRWGRCVYRNIQKFIQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEEPTDDLMKMAPVGRVEPLITRVMWRNLISQAMYQVMVLLVLEFRGRSIFDVSEKVKNTIIFNSFVLCQVFNEFNAREMEKKNIFKGLGKNRLFIVIVSLTVGLQLVMVEFLKKFANTERLTWEQWGVCVSIGALSWPIGVLVKCIPVVCKK* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3152 977 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 65 973 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vra7g3152 977 Pfam Cation transporter/ATPase, N-terminus 74 141 IPR004014 -
Vra7g3152 977 Gene3D - 95 293 - -
Vra7g3152 977 Pfam Cation transporting ATPase, C-terminus 801 970 IPR006068 -
Vra7g3152 977 Gene3D - 124 964 - -
Vra7g3152 977 PANTHER CATION TRANSPORTING ATPASE 8 963 - -
Vra7g3152 977 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 361 443 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g3152 977 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 687 798 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g3152 977 PRINTS P-type cation-transporting ATPase superfamily signature 240 254 - -
Vra7g3152 977 PRINTS P-type cation-transporting ATPase superfamily signature 417 431 - -
Vra7g3152 977 PRINTS P-type cation-transporting ATPase superfamily signature 609 620 - -
Vra7g3152 977 PRINTS P-type cation-transporting ATPase superfamily signature 631 641 - -
Vra7g3152 977 PRINTS P-type cation-transporting ATPase superfamily signature 716 735 - -
Vra7g3152 977 PRINTS P-type cation-transporting ATPase superfamily signature 740 752 - -
Vra7g3152 977 SUPERFAMILY HAD-like 415 821 IPR036412 -
Vra7g3152 977 SFLD C1.7: P-type atpase like 399 769 - -
Vra7g3152 977 SUPERFAMILY Calcium ATPase, transmembrane domain M 74 975 IPR023298 -
Vra7g3152 977 SMART Cation_ATPase_N_a_2 66 146 IPR004014 -
Vra7g3152 977 Pfam E1-E2 ATPase 195 396 - -
Vra7g3152 977 SUPERFAMILY Calcium ATPase, transduction domain A 195 292 IPR008250 -
Vra7g3152 977 PRINTS H+-transporting ATPase (proton pump) signature 570 588 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g3152 977 PRINTS H+-transporting ATPase (proton pump) signature 716 732 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g3152 977 PRINTS H+-transporting ATPase (proton pump) signature 748 773 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g3152 977 ProSitePatterns E1-E2 ATPases phosphorylation site. 419 425 IPR018303 -
Vra7g3152 977 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 423 621 IPR023299 GO:0000166
Vra7g3152 977 SFLD p-type atpase 399 769 IPR044492 -
Vra7g3152 977 Pfam haloacid dehalogenase-like hydrolase 414 730 - -
Vra7g3152 977 Gene3D - 414 761 IPR023214 -
Vra7g3152 977 PANTHER CALCIUM-TRANSPORTING ATPASE 8 963 - -
Vra7g3152 977 Gene3D - 427 616 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3152 Vra-Chr7 51273381 51276461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3152 1 973 Primary Pumps ATPases AT3G22910 65.061 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3152 K01537 - gmx:100784119 1536.93