Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3150 ATGTATACATCAAGGAAGAAAATCCACAAGGATAAGGATGCCGAGCCAACCGAGTTTGAAGAGTCAGTTGGGCAGGCACTGTTTGATTTGGAAAACACCAACCAGGAGCTTAAAAGTGATCTTAAGGATCTATACATTAATTCAGCCATCCAAATTGATGTTTCTGGGAACCGCAAGGCTGTTGTCATTCATGTTCCATACAGATTAAGGAAAGGTTTCCGCAAGATTCATGTTAGGCTTGTTAGGGAGCTCGAGAAGAAGTTTAGTGGGAAGGATGTTATCTTGGTTGCCACCCGGAGGATATTGAGGCCACCAAAGAAGGGTTCTGCTGTTCAGCGACCACGCAGCCGAACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTATAAAATTGATGGATCCAAGATCATGAAGGTTTTCTTGGACCCGAAGGAGAGAAACAACACTGAGTACAAGTTGGAGACATTTGCTGCAGTGTACAGGAAGCTTTCTGGCAAAGATGTTGTGTTTGATTATCCTGTCTCAGAGGCTTAG 576 0.4444 MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAIQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAVQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFDYPVSEA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3150 191 Coils Coil 27 47 - -
Vra7g3150 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vra7g3150 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vra7g3150 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 190 - -
Vra7g3150 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3150 Vra-Chr7 51265116 51267125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3150 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 80.105 1.73e-114 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3150 K02993 - gmx:100527680 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0610 1 7082637 7084261 Vra7g3150 7 51265116 51267125 ECH
Vra7g3150 7 51265116 51267125 Vra7g3150 7 51265116 51267125 ECH