Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3147 ATGGCAGAATTCACTGCAGATTTGCAAAGCTTTAGACCCTCCTTTCCTTTCTTGGATATCGATAACATGGAAATTCAAAACTTGGTGCCCTTTGACAGCTTATTGGGCTCTACAGAACCTGAATTTCCAGGAAACTTGGAAGACAATTTTCCGGGTCTTTTTCAATGCGTGGATCACAATGCAGTTCCAGCGTTAAATGAAGTTCATGAAGGTAAAAAGAGAGAAGCAACTGATATGGGTGATCCCAGTTCTGGTAACTCAACTCCTGATATTTCTGAGAGCGGAAGCAAGACAAAAAATATTTGTGGAAGAGGCAAGAGAGTGAAAAGGAATGCGGTAGAAGACAAGAAACCAAACCAAGTAGTTCATGTCAGAGCCAAAAGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAGAGGGTTAGAAGAGGAAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACCATGGGTATGGCAATAATGTTGGACGAGATCATAAACTACGTGCAGTCCTTGCAGCATCAAGTGGAGTTCCTGTCAATGAAGCTGAGTGCAGCAAGTAGCTATTACGACTTCAATTCAGAGTCAGATGCTTTAGAAACAATGCAGAGAAGAAAGGCATCCGAGGCGAAAGAGATAGAGAAGTATGTGAGAGAAGGAAGTGAAGGAGTTTCTTGCTTTGAAGCAACATGGCCATGGTACCTGTAA 732 0.4208 MAEFTADLQSFRPSFPFLDIDNMEIQNLVPFDSLLGSTEPEFPGNLEDNFPGLFQCVDHNAVPALNEVHEGKKREATDMGDPSSGNSTPDISESGSKTKNICGRGKRVKRNAVEDKKPNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLSAASSYYDFNSESDALETMQRRKASEAKEIEKYVREGSEGVSCFEATWPWYL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3147 243 CDD bHLH_AtBPE_like 121 205 - -
Vra7g3147 243 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 17 240 IPR024097 GO:0006355
Vra7g3147 243 Gene3D - 127 199 IPR036638 GO:0046983
Vra7g3147 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983
Vra7g3147 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 198 IPR036638 GO:0046983
Vra7g3147 243 PANTHER TRANSCRIPTION FACTOR BEE 1 17 240 - -
Vra7g3147 243 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
Vra7g3147 243 Coils Coil 207 227 - -
Vra7g3147 243 MobiDBLite consensus disorder prediction 72 108 - -
Vra7g3147 243 SMART finulus 136 186 IPR011598 GO:0046983
Vra7g3147 243 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3147 Vra-Chr7 51244645 51246332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3147 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 47.778 5.04e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g3147 HLH 0.00022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3147 - - vun:114179606 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0609 1 7069013 7071114 Vra7g3147 7 51244645 51246332 ECH
Vra4g1214 4 19096208 19099616 Vra7g3147 7 51244645 51246332 ECH
Vra7g3147 7 51244645 51246332 Vra7g3147 7 51244645 51246332 ECH