Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3143 ATGGAAGAAAACCTACCTCCTGGGTTCAGGTTCCATCCTACAGATGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCTGACGTTAGCTTCACATCCAAGGTTGTTGCTGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGGGAGAAGGAATGGTATTTCTTCAGCCTGAAAGATCGGAAATATCCGACAGGGCTTCGGACGAACCGTGCGACGGAATCAGGGTATTGGAAAACCACCGGAAAAGATAAGGAGATATTTGGCGGTGGAGTTTTGATAGGGATGAAGAAAACTTTGGTGTTTTACATGGGTAGAGCTCCAAGGGGTGAGAAAAGTAACTGGGTTATGCATGAATATAGACTTCAAAACAAGCAACCCTATAGATCTTCTAAGGAAGAATGGGTGATTTGCAGAGTCTTCCAGAAGAACTCAGCACCAAAGAAAGCACAGCAGACATCATCCTCTCAACCATCTCAAGAGTCTCCTAGCTCAATGGCGAATGAATTTGGTGATGCAGACCTACCAAATCTGAATAGCATTGGAAATTCATCTAGTGTTGCAGCACAAATTTACAACAGTGGTGATCCGAGCAATGTCAGCACAAACATGAACTTGAACATGAATTGGGCTTCTGCAACTGAGCTTCCATCTCTTCCATGGCCTTCTGGGTTGATGCTGAATCCAAACCTTTCTGTCAATTCATTGCTTCTGAGGGCATTGCAGCTTAGGAGTACATATCAACAAAGAGAAGCTGCAACTGGTGATCACTTTGCAACGTACGTTCCTCACAATAATATTGGAACTGATGATCTCAGTGTCTCAGCTTCTTCCAGAGGTTTAGAACTGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 909 0.4345 MEENLPPGFRFHPTDEELITYYLLRKVSDVSFTSKVVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLQNKQPYRSSKEEWVICRVFQKNSAPKKAQQTSSSQPSQESPSSMANEFGDADLPNLNSIGNSSSVAAQIYNSGDPSNVSTNMNLNMNWASATELPSLPWPSGLMLNPNLSVNSLLLRALQLRSTYQQREAATGDHFATYVPHNNIGTDDLSVSASSRGLELQEQPFNMDSIW* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3143 302 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vra7g3143 302 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Vra7g3143 302 MobiDBLite consensus disorder prediction 154 175 - -
Vra7g3143 302 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Vra7g3143 302 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Vra7g3143 302 PANTHER BNACNNG63190D PROTEIN 2 257 - -
Vra7g3143 302 MobiDBLite consensus disorder prediction 154 183 - -
Vra7g3143 302 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3143 Vra-Chr7 51216603 51219087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3143 1 302 NAC Transcription Factor Family AT3G18400 56.740 7.64e-115 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra7g3143 NAM 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3143 - - gmx:100775645 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3143 7 51216603 51219087 Vra1g0603 1 7023127 7025122 PCT