Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3139 ATGAGAGACATGAAAGATGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGGTGGTTCTGTGCGGCTGATAATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCATTCGGCCAACCAGTTAGCTAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCATCCTCCAAGGTAACCACCACCACCACACACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAACAAACACTTTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAACAACAGCAGTGTTCTTCCCCTGGTTCCGGAGATGGGAGGGGAAGAACAAGAGCCCGTGGCTGTGGATAATGACGAGACGGAGGAACAGATGCTTTGCCGCGTGCCCGTGTTCGACAATTATGATGTGAGAACAGATGACTTGGACAGTTTTTCCGACATGGATTTCGCGGAGTTTGCTGCTGATGTTGAAAACCTACTTGAGAAAGAAGACGATGAAGTAAGCGCGCGTGTGGGAGGGGGAGTTCAGGGTGCAATGGCGAAGGTTAAGGATGAAGAGGATATTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGACGAACGATGATGCCTTTCATTGGAATAGCATTGAGTCCGTGTTGTCAGATGCACGGGAAAAGAAGGAGTGTGTGGTGGCGAGTGATGGTGCTGTGGGTGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTTAACTACGATGAGGTTATAACTGCATGGTCTAGCCAAGGTTCTTCTCCATGGACAACATCAAACCCACCTAAGTTCAACTCTGGCTATGACTTCTGCTTGGGTCTGAGTGGTGTAGACGGGGACGTAAGAGCCTTAAGGGGTGACCTAGACGGAGGAAGAGAGGCAAGAGTGTCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATTAGATATGAAGTGAGAAAGTTGAACGCAGAAAAAAGGCCCAGAATGAAAGGTCGTTTTGTGAAGAGAACATGCTTTGTGGGGGCGAATGCTTTTCCTGCTTACCAATGA 1110 0.4856 MRDMKDAGALGAKTARACDSCISRRARWFCAADNAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTTTHAWHSGFTRKARTPRHNNNKHFALQQRLKEEVLFNNSSVLPLVPEMGGEEQEPVAVDNDETEEQMLCRVPVFDNYDVRTDDLDSFSDMDFAEFAADVENLLEKEDDEVSARVGGGVQGAMAKVKDEEDIDGDVACYLESVFDMTNDDAFHWNSIESVLSDAREKKECVVASDGAVGEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSGYDFCLGLSGVDGDVRALRGDLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYQ* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3139 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 362 - -
Vra7g3139 369 Pfam CCT motif 314 356 IPR010402 GO:0005515
Vra7g3139 369 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Vra7g3139 369 CDD Bbox1_BBX-like 17 60 - -
Vra7g3139 369 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Vra7g3139 369 SMART bboxneu5 13 60 IPR000315 GO:0008270
Vra7g3139 369 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 362 - -
Vra7g3139 369 ProSiteProfiles CCT domain profile. 314 356 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3139 Vra-Chr7 51183118 51185292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3139 7 356 C2C2-CO-like Transcription Factor Family AT1G25440 43.794 3.37e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vra7g3139 zf-B_box 5.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3139 - - vun:114176987 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3139 7 51183118 51185292 Vra1g0597 1 6969713 6973207 PCT