Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3125 ATGGATTTAGAAGAGAAGTTCCTGGCTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGGTGCTTCAAAAAGTTCAGAACTCCTTCAACAGTTCCTAAAATGTGGTGTGAAGAAGGAACTTCTTCGCACGTGTTTTGATAAGGACAAAAAAAACATTTCAATTAAAAGCAGGATGACTGAAACTAAGTCAACTGCGAAGATGATTAAGAAACAAGACACAAAAAAGGTTTCTAGTTTCAGCCACCAGCCATCTAGAAAGCAGTCTCGGAAGGGTGAAAATCCCACTCGAGTCATACCTCCTTCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTGTCTATAGATGACACATTCTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAGTCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGCGCCCTTCTACATAAGAAGGTGGGGGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACGGGGATACTCGGATGTTGGAAGAAGCAGCTAAATATTGCTAAGGATGCCCGACGTGTGGATGTACTCTGTTACAGGATATATTTGGGCTACAGGCTCCTGGATGGAACCACAAAATTCAAAGACTTGCATCAAACAGTACAAGAGGCGAAGGCTAAGCTGGAGACAGAAGTTGGCCCTATGAATGGCGTTTCTGCCAAGATGGCTAGAGGCATTGTCAGCAGACTCCCTATTGCCAATGATATACAGAAACTCTGTTCACTTGCTATTGAGAAAGCTGATAGCTGGCTTGCCACTGTTCACAATGTAAATTCAGATTCTACAGGGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCCGTGAAAATCATTTTAATTGAATTATCAAATATATGTTCTGAGGAGATCAAGGGATACAAGCTTTGGTATTACACGAGTCGGGATGAATCACCCACCAAAGATCCTGTTTCCGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACAGATACACGTGACCTGGGTCATTCTGAGGCTAAGTGTTTTACCAAGAGCATCGAGGTAATTAAAAACAATCCCTCTCCATCTGTCGCTATGAATCATGAAAAAGAGAACCTTCTATCTAGGGGCAATTCTTCGGGATCGAAGATGGTGCCAAATGACGCAATGGGCAACCATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGTTGTGCCAATACGAAAAATTGCTGTGGTCAGAGTGAACGGTTAGATAAACCAAGAATTCCAGAGGCACAGTTGCCCTCAGTTTCTAGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGTTGCAAACTGTGGAGGGGGACGATGATGCAGCTTCTCATGATCTAGAGAAAAATGGTTTAGCTAGATCACATGGGAGTGGGGATTCTCAAACCTGGACCCATGGGCCAACAGGAGAAGTATCTGCTGTTGATTCACGCGTAGATATGTGCAGAAAAAGGATGGCAAGCGCAATGGAAGAGACACATGATTGTGACAGCACTTTAATTAACGGTTCTCCATTACGCATATGTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATTAAACAGGAATTTAGGTTGAAGTTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGAAGGGTGGTTAATACCTTCATTCAGACTCTTATGGATGATCCGAGTAGTTTGGCTGGGCAACTGGTAGACTCTTTTTCTGATATTATATCAAACAAGAGGCAAAAAAATGGATTCAGTATTAAAGCCGGGGCATCAAATTAA 2166 0.4206 MDLEEKFLAKVSGVQSLSSSVQSTPEKNGHSDGASKSSELLQQFLKCGVKKELLRTCFDKDKKNISIKSRMTETKSTAKMIKKQDTKKVSSFSHQPSRKQSRKGENPTRVIPPSDQSSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALLHKKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLGYRLLDGTTKFKDLHQTVQEAKAKLETEVGPMNGVSAKMARGIVSRLPIANDIQKLCSLAIEKADSWLATVHNVNSDSTGGSLPAACKFVFEEVTTSSVKIILIELSNICSEEIKGYKLWYYTSRDESPTKDPVSVFPKSQRRILISNLKPCTEYTFRIISYTDTRDLGHSEAKCFTKSIEVIKNNPSPSVAMNHEKENLLSRGNSSGSKMVPNDAMGNHGFKVRDLGKILRLAWAQEQGYLEEFCCANTKNCCGQSERLDKPRIPEAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQTVEGDDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRVDMCRKRMASAMEETHDCDSTLINGSPLRICDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIISNKRQKNGFSIKAGASN* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3125 721 MobiDBLite consensus disorder prediction 11 36 - -
Vra7g3125 721 CDD FN3 357 408 IPR003961 GO:0005515
Vra7g3125 721 MobiDBLite consensus disorder prediction 69 120 - -
Vra7g3125 721 Gene3D Immunoglobulins 313 417 IPR013783 -
Vra7g3125 721 MobiDBLite consensus disorder prediction 574 589 - -
Vra7g3125 721 MobiDBLite consensus disorder prediction 12 36 - -
Vra7g3125 721 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 716 IPR044514 GO:0010048|GO:0040029
Vra7g3125 721 PANTHER VIN3-LIKE PROTEIN 1 55 716 - -
Vra7g3125 721 MobiDBLite consensus disorder prediction 569 590 - -
Vra7g3125 721 Pfam Fibronectin type III domain 333 409 IPR003961 GO:0005515
Vra7g3125 721 MobiDBLite consensus disorder prediction 69 89 - -
Vra7g3125 721 SUPERFAMILY Fibronectin type III 332 409 IPR036116 GO:0005515
Vra7g3125 721 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Vra7g3125 721 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3125 Vra-Chr7 51050720 51059394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3125 124 712 PHD Gene Family AT3G24440 48.680 1.33e-178 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3125 - - gmx:100816128 1333.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3125 7 51050720 51059394 Vra7g3125 7 51050720 51059394 ECH
Vra7g3125 7 51050720 51059394 Vra1g0566 1 6637594 6646364 PCT