Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3122 ATGGCTAGTCGACTGAAGGAAGATGAGAAACATGAACGAATAATTCGAGGTCTTCTTAAACTCACGCCGAATCGAAGATGTATTAACTGTAACAGTCTGGGACCACAATATGTGTGCACGAATTTCCGGACGTTTGTATGCACTAACTGTAGCGGAATACACCGAGAATTTACACATCGGGTGAAATCAATTTCAATGGCCAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGTGGAAATCAGCGTGCAAAAGAAATCTATTTTAAGGAATGGGACCCACAACGTAATTCTTTTCCTGATAGCAGCCATGTTGACAGGCTCCGGGATTTCATCAAGCATGTTTATGTCGATAGAAGATTCAGCAGTGAGAAGACCAATGATAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCTATGAAAACAAGAAGACAGAGATGTACCAGGGCGGACCGAAAAGCCCTCCATATGAGGATCGTTACAGCGATAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAGGCAATATGCTGATTACAAGGTAAGTCCTAGTCGTCCTCCTATAATCAATGACTGGCATGGAGAAGAAAGATTTGGGGATCGACGAAAATATGATGATCAGAGAATATCTGATGGAAATCATAAGGGGGAAAGCCATTCTCCTGATCATACCAAGGATCCAGATTCTTCCAGCCCCCCTGTAGTCCGACCTGTTAGAGAAATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCACCCAAAACAAATGGTGTACAGGCTGCTAATGGCTCAACACTCGCACAGAGGACTGCATCTTCCAGTACCTTAGCATCCAGCCATGTAACCCGGACAGAAGTTAAGCCTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCTGTTACTCCAGCAATTACTCAAGCCCAACAAACTACTGTTGCTGAACTTGGGATGCCTGCAAATTCCAATGGTAATAATTGGGCCTCTTTTGATTTTTCTCCTGAGCCAAAAGCACCTCAAGGTCCTTCAATCGTAAATCCACTTGAATCTGTGCTGACACAATTGACAGTACCAGTATCTTTACCCTCTCAGGTTTCCCTAGCCCAAGGACCTTTGACGGGATCAACTCTTACTGCTACTGCTGCTGGAGGACAGTGGGCTAGTTTGCAGTATCAGCAACAACAACCTTTGTTCACTGCTGCTGCAAGTCAGCCTTCTATTCAACAAGCCACACCACCAGTTGCTGCAGCTTTGAATAATCAGCCCTGGACCGTACCATCTGTACCATCAGTACAAGGGCATCCAAGCACATCAATACCCCATGCATCACACCTTGTCCCAAAGCCTGCCAATGAGGTTATGTCCAGTGTTGTTTTACAAACTTCTGCAGTTGACATGAAACCAAGTGGAAGAAGTGAGCTTCCGGAGGACCTATTCACGGTAAAATATTCATCCTTCCCTGCTCCAGTCCCAGGTTGGCAAACGGGTCTACCACCTAGTATGGGTATCCCAATTCATTACAATAATGCAGTGCCCATGCCAAGTTTTCCACAAGCATCAAAGTCAATAAATCCATTCGACGCCAGTAACGAACCTACTCCAGTTCAAGTCCCAACATTTCCTTCCATGTCATCTCTGCAAGGTGCTCTGCCTAGTGTAACGCCTTCGGCTAAAATCCACCCTTCAAATATGGGAAATCCATCTTTTGCCTGGAATCCGTCATCATCATATGCATTAGTGCCGCCTCCTCAAGCACAAACTATTGCACCCGTAATGGGACCAGGGGCATACATGGGAATACACGTTAACAATCCGCAGATGGTCACTAACATGCCAATCCCAAGGCATCAAGGATTTGGGAGGTTGGCGACCGAGGGAACTGCTTTTGGCTTCTCAAATCCAGATCAGAAGCTGAGTAGTAGTAGGTTGTCAACTGCTGTTACCCCAAACACCTTTCAGGCAGGAGGAAATCCTTTCGGATGA 2022 0.4505 MASRLKEDEKHERIIRGLLKLTPNRRCINCNSLGPQYVCTNFRTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKEIYFKEWDPQRNSFPDSSHVDRLRDFIKHVYVDRRFSSEKTNDKPPRVKGDKDDFYENKKTEMYQGGPKSPPYEDRYSDRSSPGGRSPGYDQENRQYADYKVSPSRPPIINDWHGEERFGDRRKYDDQRISDGNHKGESHSPDHTKDPDSSSPPVVRPVREILGENVVPLRISEPPKTNGVQAANGSTLAQRTASSSTLASSHVTRTEVKPETIKSLIDFDDDPEPSVTPAITQAQQTTVAELGMPANSNGNNWASFDFSPEPKAPQGPSIVNPLESVLTQLTVPVSLPSQVSLAQGPLTGSTLTATAAGGQWASLQYQQQQPLFTAAASQPSIQQATPPVAAALNNQPWTVPSVPSVQGHPSTSIPHASHLVPKPANEVMSSVVLQTSAVDMKPSGRSELPEDLFTVKYSSFPAPVPGWQTGLPPSMGIPIHYNNAVPMPSFPQASKSINPFDASNEPTPVQVPTFPSMSSLQGALPSVTPSAKIHPSNMGNPSFAWNPSSSYALVPPPQAQTIAPVMGPGAYMGIHVNNPQMVTNMPIPRHQGFGRLATEGTAFGFSNPDQKLSSSRLSTAVTPNTFQAGGNPFG* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3122 673 CDD ArfGap_AGFG 12 124 - -
Vra7g3122 673 PANTHER ARF GTPASE ACTIVATOR 397 673 - -
Vra7g3122 673 PANTHER ARF GTPASE ACTIVATOR 1 396 - -
Vra7g3122 673 MobiDBLite consensus disorder prediction 123 146 - -
Vra7g3122 673 PANTHER ARFGAP/RECO-RELATED 397 673 IPR044820 GO:0005096
Vra7g3122 673 PANTHER ARFGAP/RECO-RELATED 1 396 IPR044820 GO:0005096
Vra7g3122 673 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vra7g3122 673 SMART arf_gap_3 12 131 IPR001164 GO:0005096
Vra7g3122 673 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 131 IPR001164 GO:0005096
Vra7g3122 673 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Vra7g3122 673 MobiDBLite consensus disorder prediction 264 293 - -
Vra7g3122 673 Pfam Putative GTPase activating protein for Arf 13 125 IPR001164 GO:0005096
Vra7g3122 673 MobiDBLite consensus disorder prediction 123 293 - -
Vra7g3122 673 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vra7g3122 673 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vra7g3122 673 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vra7g3122 673 MobiDBLite consensus disorder prediction 197 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3122 Vra-Chr7 51020151 51027027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3122 12 122 C2H2 Transcription Factor Family AT4G21160 34.188 1.98e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3122 7 51020151 51027027 Vra7g3122 7 51020151 51027027 ECH