LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g3121	ATGGCTAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCACGCCGAATCGGAGATGTATTAACTGTAACAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTATGCACTAGCTGTAGTGGAATACACCGAGAATTTACACATCGAGTAAAATCAATTTCAATGGCCAAATTTACTGCACTAGAAGTTAGTGCACTTCAGGAAGGTGGAAATCAGCGTGCAAAAGAAATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATGTTGACAGGCTCCGGGATTTCATCAAGCATGTTTATGTGGATAGAAGATTCAGTGGTGAAAAGACCAATGATAAACCTCCAAGAGCCAAGGGTGACAAGGATGATTTCTATGAAAGCAAGAGGACAGAGACGTATCAAGGGGGACCTAAAAGCCCTCCTTATGAGGATCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCGGGATATGATCAAGAAAATAGGCAATACGGTGGTGATTACAAGACAAGTCCTGGTCGTCCTCCTATAATCAATGATTGGCGTCGAGAAGAAAGATTTGGAGATGGACGGAAATATGAAGATAATAAAATATCCGATGGAAATCATAAGTGGGAAGGCCATTCTCCTGATCGAACCAAGGATTCAGGTTCTTCCAGCCCACCCATTGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCACCCAAAACAAACAGTGGTCTGGCTGCTAATGGCTCAACACTCACGCAGAGAACTGCATCTTCCAGTAGCTTAGCATCTAGCCATGGAACCCCAGTAGAAGTTAAGCCCGAGACTCTGAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCTGTTGCTCCAGCAATTCCTCAAGCCCATCAGACTGCTGTGGCTGAACTTGGGATGCCTGCAAATTCCAATGATAACAATTGGGCATCTTTTGATTTTGCTCCTGAGGCAAAAACACCTCATGGTCCTTCAAACGTTAATCCACTTGAATCTATGCTTACTCAATTGACAGGACCAGTATCTTTACCTTCTCAAGTTTCCCAAGCCCAAGGATCTGTGACGGGATCAACTCTTGCTGCTACTGCTGCTGGAGGTACAATTGCTAGCGGCTTCTCAACATTCCCACCCAGTGGTGCTTCAGTAACATCTTCCGGATTGATAACAGCTTCAACTCTGAATAATGCTGGACAGTGGGCTAGTTTGCAGTATCAGCAACAGCAACCTTTGTTTGCCGCAGCTGCTAGTCAGCCTTCTATTCAACAAGCTACACCACCAGTCGGTGGAGCTTTGAATAATCAGCCCTGGACTATACCCTCGGTACCATCAGTACAAGGGCATCATCCAAACACAGTAATGCCCCATGCGTCGCACCTTGTCCCAAAGTCTGCCAATGAGGCTAAATCCAGTGTTGTTTTACAATCGTCTACAGTAGACATGAAGCCAAGTGGAAGAAGTGAACTTCCGGAGGATCTATTCACAGTTAAATATTCATCCTTGCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCTACCACCTAGCATGGGTATTTCAATTCCATACAATAATGTGGCGCCCATTCCAAGTTTTCCACAGGCATCAAAATCAAAAAATCCATTTGATGTCCATAACGAACCTACTCCAGTTCAAGCCCCAACATTTCCTTCCATGTCATCTCTGCAAGGTGTTCTGCCAATACATTCAGCTACAATGCACTCTTCAAACATGGGTAATCCATCTCTTGCCTGGAATCCGTCCTCATCATCATATGCATCAGTGCCGCCTCCTCAAGCACAAACCCTTGCACCCGCAATTGGACCAGGGGCATACATGGGACAACAAATGGTCTCTAACATGCCAATGCCAAGGCATCAAGGATTTGGGAATTTTACTACTGAGGGAACTGCTTTTGGCTTCTCAAATTCAGATCAGCAGCTGAGTGGTAATAGGTTGTCAACTGCTGTTACCCCAAACAACTTCCAGGCAGGAGGAAACCCTTTCGGATGA	2103	0.4494	MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTSCSGIHREFTHRVKSISMAKFTALEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFSGEKTNDKPPRAKGDKDDFYESKRTETYQGGPKSPPYEDRYSDRSSPGGRSPGYDQENRQYGGDYKTSPGRPPIINDWRREERFGDGRKYEDNKISDGNHKWEGHSPDRTKDSGSSSPPIVRPVREILGENVVPLRISEPPKTNSGLAANGSTLTQRTASSSSLASSHGTPVEVKPETLKSLIDFDDDPEPSVAPAIPQAHQTAVAELGMPANSNDNNWASFDFAPEAKTPHGPSNVNPLESMLTQLTGPVSLPSQVSQAQGSVTGSTLAATAAGGTIASGFSTFPPSGASVTSSGLITASTLNNAGQWASLQYQQQQPLFAAAASQPSIQQATPPVGGALNNQPWTIPSVPSVQGHHPNTVMPHASHLVPKSANEAKSSVVLQSSTVDMKPSGRSELPEDLFTVKYSSLPAPVPGWQMGLPPSMGISIPYNNVAPIPSFPQASKSKNPFDVHNEPTPVQAPTFPSMSSLQGVLPIHSATMHSSNMGNPSLAWNPSSSSYASVPPPQAQTLAPAIGPGAYMGQQMVSNMPMPRHQGFGNFTTEGTAFGFSNSDQQLSGNRLSTAVTPNNFQAGGNPFG*	701

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g3121	700	MobiDBLite	consensus disorder prediction	265	291	-	-
	Vra7g3121	700	CDD	ArfGap_AGFG	12	122	-	-
	Vra7g3121	700	MobiDBLite	consensus disorder prediction	123	146	-	-
	Vra7g3121	700	MobiDBLite	consensus disorder prediction	453	488	-	-
	Vra7g3121	700	MobiDBLite	consensus disorder prediction	453	479	-	-
	Vra7g3121	700	PANTHER	ARFGAP/RECO-RELATED	1	700	IPR044820	GO:0005096
	Vra7g3121	700	MobiDBLite	consensus disorder prediction	197	232	-	-
	Vra7g3121	700	MobiDBLite	consensus disorder prediction	339	363	-	-
	Vra7g3121	700	Gene3D	Arf GTPase activating protein	2	133	IPR038508	-
	Vra7g3121	700	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Vra7g3121	700	PANTHER	ARF GTPASE ACTIVATOR	1	700	-	-
	Vra7g3121	700	MobiDBLite	consensus disorder prediction	123	243	-	-
	Vra7g3121	700	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Vra7g3121	700	MobiDBLite	consensus disorder prediction	258	295	-	-
	Vra7g3121	700	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Vra7g3121	700	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Vra7g3121	700	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Vra7g3121	700	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Vra7g3121	700	Pfam	Putative GTPase activating protein for Arf	13	123	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g3121	Vra-Chr7	51008559	51015972	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g3121	12	122	C2H2 Transcription Factor Family	AT4G21160	33.333	2.38e-11	63.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g3121	-		-	vra:106765388	1129.78