Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3117 ATTCCTTACACCTTTCGTTTTGTTTTCTCTGTACTATTGACAGGAAAGACATTCGAGAGCATAGATCCAAGAACTGGAGAGGTTATAGCAAGTATCAGCGAAGGAGATAAAGAAGACATAGACATTGCTGTTAAAGCAGCACGTCACGCCTTTGACTATGGTCCTTGGCCTCGCATGTCTGGCGCTGATAGAGCTAGAATACTATTGAAATGGGCGGAATTAATTGATGAACACGTAGAAGAACTTGCAACACTGGATGCCATTGATGCAGGGAAGCTATATCACATGTGTAAGAATTTGGAAGTTCCAGCATCCGCAAACACTCTACGTTACTATGCAGGTGCTGCCGACAAGATTCGTGGAGAGGTCTTGAAAAGCTCTGGAAAGTTCCATGCGTACACATTATTTGAGAAAAAATTGTTGGAGAAGGCAAAAGCTTGGGTGGTTGGAGATCCTTTTGATCCTAAAGTCCAACAGGGACCACAGGTTGACAAGGAACAGTTTGAGAAGATTCTTTCATATATTGAGCATGGAAAGAGAGAAGGAGCAACCCTTTTAACCGGTGGTAAAACATTGGGCGATAAAGGATACTTCATTGAGCCAACAATTTTCTCTGATATAAAGGACGATATGCTCATAGCACAAGATGAAATATTTGGCCCTGTGATGGCGTTGAAGAAGTTTAAGAGCATTGAAGAAGCAATTAAAAGTGCGAATAATAGCAAGTATGGGTTAGCAGCAGGCATAGTGACAAAGAATTTGGATACAGCAAATACAGTGTCAAGGTCGATTCGTGCAGGTACCGTTTGGATCAATTGCTACTTTGCCTTTGGTGATGATGTTCCCTTTGGAGGGTACAAGATGAGTGGATTTGGAAAAGACCATGGCTTGGAAGCCCTTTACAAATACTTGCAAGTTAAATCTGTTGTAACTCCTCTTTACAATTCTCCTTGGCTTTGA 960 0.4167 IPYTFRFVFSVLLTGKTFESIDPRTGEVIASISEGDKEDIDIAVKAARHAFDYGPWPRMSGADRARILLKWAELIDEHVEELATLDAIDAGKLYHMCKNLEVPASANTLRYYAGAADKIRGEVLKSSGKFHAYTLFEKKLLEKAKAWVVGDPFDPKVQQGPQVDKEQFEKILSYIEHGKREGATLLTGGKTLGDKGYFIEPTIFSDIKDDMLIAQDEIFGPVMALKKFKSIEEAIKSANNSKYGLAAGIVTKNLDTANTVSRSIRAGTVWINCYFAFGDDVPFGGYKMSGFGKDHGLEALYKYLQVKSVVTPLYNSPWL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3117 319 SUPERFAMILY ALDH-like 136 315 IPR016161 GO:0016491
Vra7g3117 319 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 134 280 IPR016163 GO:0016620
Vra7g3117 319 SUPERFAMILY ALDH-like 14 136 IPR016161 GO:0016491
Vra7g3117 319 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 12 137 - -
Vra7g3117 319 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 136 319 - -
Vra7g3117 319 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 136 319 - -
Vra7g3117 319 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 12 137 - -
Vra7g3117 319 Pfam Aldehyde dehydrogenase family 133 309 IPR015590 GO:0016491
Vra7g3117 319 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 281 309 IPR016162 GO:0016491
Vra7g3117 319 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 8 133 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3117 Vra-Chr7 50955133 50958512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3117 120 319 Aldehyde Dehydrogenase Gene Family AT3G24503 64.706 3.98e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3117 K12355 - gmx:100817721 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3117 7 50955133 50958512 Vra1g0554 1 6477517 6481098 PCT