Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3099 ATGGCATTTTCTGCTTCAACTCACAAATCTGCAGGAATTCATCCAGGGGCAATCAATGATGATTTATACAAGGAGTTGTGGCATGCCTGTGCTGGTCCCCTTGTCTCTCTCCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCGATACACGAGGGATTGGAGCAGCAGATGCCTTCCTTCAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAATCCGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGTAGATCAAAGTGAGGTGACGAGCCCTGATGATCCTTTGACTGAAATTCCAAGGGCCAAGATCCATTCATTTTGCAAGACACTTACTGCTTCTGATACCAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACACGCCGATGATTGTCTGCCTCCATTGGATATGTCACAGCAACCACCATGGCAGGAATTGGTTGCAACTGATTTACACGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAAGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCCTTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGGGTTAGGAGGGTGATGAGACAGCAGAGCAATGCGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTAGGTGTTCTGGCCACTGCATCTCATGCCATTACCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGCGTCAACAACTATCTGGAAGCTCAGAGCCATAAACTCTCTGTCGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAATTCCCGAAAGAAGGTTCAGTGGCACAATCGTGGGTGTTGGAGATAATAAATCATCGGTATGGCCTGATTCCGAGTGGCGATCCTTAAAGGTACAATGGGACGAACCATCGTCAATTTTGCGCCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACATGTCTCTACCACTCCTGCAAACCCGCAGCCAACACAAAGAAACAAGAGGGCACGACCTCTTATTCTACCTTCTACAGTGCCTGATTCTTCTTTGCAAGGGATGTGGAAATCTGCCGCTGAATCTACATCTTTCTCTTATTGTGATCCTCAACATGGACGTGGCCTCTATCCATCACCAAAGTTCAATCCTTCTGCAAATAACTTTATTGGTTTTAGTGGGAATAGCTTTGTGGGACCTCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAGTTCCTTGGAATCAATTTCAGCTATAGCCTTTAAAGAAGCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGCAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAATGCAGAAGGAAGTCTACAAACAGTCTCTTTATCTGGAAGGCTGGGTGATGATAGGTTTATTCCATCATTAGATGTTGAATCTGATCAGCATTCTGAGCCATCAAATGCCAATCGATCTGATATTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGTCTCCGCAGGAGTTGCAAAGCAAGCAAATAAGGAGCTGTACAAAGGTTCATATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTGACACGATTTTGTGGATACGAAGATCTGCTCATAAAATTAGAAGAGATGTTTGACATCAAGGCTGAGCTGTGTGGGTCCATAAAAAAATGGCAGGTTGTCTACACTGATGATGAAGATGATATGATGATGGTTGGAGACGATCCATGGGATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTACACGACAGAGGAGGTGAAGAAGCTCTCCCCGAAAATAGGACTTCAAGTTAATGAAAAATTGAAATCAAACAAGCAGGACTGGGAAGAAATATTCAATCCCGAGGAGCAGTCGTCTAATGTGGGGCCCAGTTGCTAG 2028 0.4408 MAFSASTHKSAGIHPGAINDDLYKELWHACAGPLVSLPREGERVYYFPQGHMEQLEASIHEGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPEVDQSEVTSPDDPLTEIPRAKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRVMRQQSNAPSSVISSHSMHLGVLATASHAITTGTLFSVFYKPRTSRSEFIVSVNNYLEAQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSSVWPDSEWRSLKVQWDEPSSILRPDRVSSWELEPHVSTTPANPQPTQRNKRARPLILPSTVPDSSLQGMWKSAAESTSFSYCDPQHGRGLYPSPKFNPSANNFIGFSGNSFVGPPSNKSIYWSNRMESSLESISAIAFKEAGEKRQGTGNGCRLFGIQLLENSNAEGSLQTVSLSGRLGDDRFIPSLDVESDQHSEPSNANRSDIPSVSCDAEKSCLSPQELQSKQIRSCTKVHMQGMAVGRAVDLTRFCGYEDLLIKLEEMFDIKAELCGSIKKWQVVYTDDEDDMMMVGDDPWDEFCSVVRKIFIYTTEEVKKLSPKIGLQVNEKLKSNKQDWEEIFNPEEQSSNVGPSC* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3099 675 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra7g3099 675 Gene3D - 546 640 - -
Vra7g3099 675 Gene3D - 124 229 IPR015300 -
Vra7g3099 675 Gene3D - 290 363 - -
Vra7g3099 675 SMART B3_2 127 229 IPR003340 GO:0003677
Vra7g3099 675 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vra7g3099 675 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Vra7g3099 675 SUPERFAMILY DNA-binding pseudobarrel domain 115 256 IPR015300 -
Vra7g3099 675 ProSiteProfiles PB1 domain profile. 551 644 IPR000270 GO:0005515
Vra7g3099 675 Pfam AUX/IAA family 548 641 IPR033389 -
Vra7g3099 675 CDD B3_DNA 125 227 IPR003340 GO:0003677
Vra7g3099 675 SUPERFAMILY CAD & PB1 domains 554 628 - -
Vra7g3099 675 PANTHER AUXIN RESPONSE FACTOR 9 9 652 - -
Vra7g3099 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 652 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3099 Vra-Chr7 50656804 50664000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3099 5 674 B3 DNA Binding Superfamily AT1G59750 69.436 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra7g3099 AUX_IAA 9.4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3099 K14486 - gmx:100815450 1237.25