Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3094 ATGGACAGCAGCACGGTCTCACTGTTGTCGCCTCTTCCCACTCTTCGTTTTCTTTCATCTGAAAAACTAACTCCTACCTTTTGCGTCCTTCCACCTCACAACCATTTTCTCAAACACTTCTCCTACGCCAATAACCATAATCGCAGCTCCAAATTCAGAACTCCAGAAGCCGTTCTCGATACTTCTCCCATAACCCCAACAGCGCTCACCACTCCCTCTCTCAGAGAATTATGCCAACCTCACGTTCCTCAACACATATTGCAAAGGATGGAAGAGATTGGATATGTAATGCCCACAGGTATCCAGAGGGAAGCTCTGCCTTACCTTTTTTCCGGGCGTGACTGCATTCTTCATGCTCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTTTGATTCACTCCCTCATCAATGCTGCAAAATCCTCTGTGCAAGCCCTAGTTGTTGTGCCCACCCGGGAACTCGGAATGCAAGTCACTAAGGTCGCTAGGACATTGGCTGCAAAGCCAACCGGAGTTGTTGGGGAGCACAAGTCATGTTCTATCATGGCTCTGCTAGATGGAGGAACACTAAAAAGACAGAAGACTTGGTTAAAGGCAGAGCCACCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATACTTTTTCGCTTGAAACTGTGCGTGTGCTGATCGTTGATGAGGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCACTTCGAAAGATTTTGACTTCATATTCATCTTGCAATAACCGTCAGACAGTCTTTGCCAGTGCATCTATACCACAGCATAACCGATTTATTCATGACTCTGTGCAGCAAAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAAGATGTGAAACCAAAAGAAAGTTACAAACCCTGTTATCCTTGTTACAATCTGATGCACCCGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCCAAAAAGGCTGGAAAGGCTCCATCAACGTCCCTTCTGATTGACTTTTTGAAGACATCATACCAAGGTGATTTGGATGTCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGCTTGAGGTTAGAAAAGGAGGTGGATATCTTCTTGTAGCAACAGATATAGCTGCTAGAGGGGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCTGTTGATTATCTTCATCGAGCAGGCCGAACATGCAGGAAGCCTTTTTCTGACATCAATTGTACTGTTACCAGCATTATTGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTGACTGCGAAGAGCTTATTATTCCATAA 1428 0.4405 MDSSTVSLLSPLPTLRFLSSEKLTPTFCVLPPHNHFLKHFSYANNHNRSSKFRTPEAVLDTSPITPTALTTPSLRELCQPHVPQHILQRMEEIGYVMPTGIQREALPYLFSGRDCILHAQTGSGKTLTYLLLIHSLINAAKSSVQALVVVPTRELGMQVTKVARTLAAKPTGVVGEHKSCSIMALLDGGTLKRQKTWLKAEPPTIVVATVGSLCQMLERHTFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIRCETKRKLQTLLSLLQSDAPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDVLLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAVDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFDCEELIIP* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3094 475 Gene3D - 38 293 IPR027417 -
Vra7g3094 475 Pfam DEAD/DEAH box helicase 99 272 IPR011545 GO:0003676|GO:0005524
Vra7g3094 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 288 IPR014001 -
Vra7g3094 475 CDD DEADc 86 272 - -
Vra7g3094 475 Gene3D - 302 472 IPR027417 -
Vra7g3094 475 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 473 - -
Vra7g3094 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 440 IPR027417 -
Vra7g3094 475 Pfam Helicase conserved C-terminal domain 317 436 IPR001650 -
Vra7g3094 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 52 473 - -
Vra7g3094 475 CDD SF2_C_DEAD 307 436 - -
Vra7g3094 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 475 IPR001650 -
Vra7g3094 475 SMART helicmild6 354 438 IPR001650 -
Vra7g3094 475 SMART ultradead3 94 309 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3094 Vra-Chr7 50591245 50596708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3094 84 460 Eukaryotic Initiation Factors Gene Family AT3G13920 26.842 2.21e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3094 - - gmx:100786205 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3094 7 50591245 50596708 Vra7g3094 7 50591245 50596708 ECH