Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3092 ATGATGTCATTGGTGAAGTACTCGGCATGGCCTCTCACCAACCCTGCTACCTTAAGTCACATGGTGCCAAGGCCTCAATTCTGCACTTTCCCTTCATTAAACAATGTTCAACACTGCACTCAACCCTCACTGTCTTCCCTCAAACCTCTTCACATTTCATCCGTTGAGAAGTTTGGTTTGTCAGCAAATCTCGGAAGAAGGGTCACAGAGTGCCGGGCCTATGAAGCAGACAGGTCACGGCCACTTGAGCTTAACATTGAGCTTAACGGCGAAGGAGAAAGGATTGAAGCAACCCAGAGAGTCAAAATTGGTTTGTATTTTGCCACCTGGTGGGCTTTGAATGTGGTCTTCAACATATACAACAAGAAGGTTCTGAATGCCTTTCCTTATCCCTGGCTTATTTCCACTCTGTCCCTTGCTGCTGGCTCTCTCATGATGTTAATCTCATGGGCCACAAGGGTTGCTGATGTTCCCAAAGTTAATCTGGAGTTCTGGAAGGCCCTATTTCCTGTTGCTGTGGCACACACAATTGGGCATGTTGCAGCTACTGTGAGTATGTCCAAAGTTGCAGTTTCATTCACCCACATCATCAAGAGTGGAGAACCTGCTTTCAGTGTCCTGGTATCAAGGTTCTTGCTGGGGGAAGCATTCCCTGTGCCGGTTTACCTCTCACTGGTTCCAATTATAGGAGGTTGCGCACTTGCTGCTGTGACAGAGCTGAATTTCAACATGATTGGATTTATGGGCGCTATGATATCCAATTTGGCCTTTGTGTTTCGGAACATATTCTCAAAGAAGGGAATGAAAGGGATGTCTGTTAGTGGAATGAATTACTATGCTTGTCTTTCCATATTATCTCTATTGATTCTCACACCTTTAGCCATTGCGGTGGAGGGCCCAAAGTTGTGGGCTGCAGGCTGGCAAGAAGCCTTGTCTCAGATTGGTCCCAATTTTGTCTGGTGGGTAGCTGCTCAGAGTGTGTTTTACCACTTGTACAACCAAGTATCTTACATGTCCCTTGATCAGATTTCTCCCTTAACATTTAGCATAGGGAACACAATGAAGAGAATTTCTGTTATTGTGTCTTCAATCCTTATTTTCCACACACCAATTCAGCCTGTCAATGCTCTTGGTGCAGCCATTGCAATTCTTGGTACATTCCTCTATTCACAGGAAGACAATGCAATGGGGTTTTGTGGATATAAGGAAGGATTGGTTTTGGAGATAATGTTGTTCCTGTTCATGTGCTCTCTGCTGCCAATTTCACTGGGATTAGATCCATCTCCACCTTTTCTCTTTGGCACTGCTTCTTCTTCCTACCAGTATGAAGGAGCTTACTCTAGTGACGGTAAAGGGTTGAGCAACTGGGATGTCTTCTCTCACACAGCAGGTAGTATAGATGATGGAAGTAACGGTGACGTTTCTGTTGATCAATACCATCGGTATCAGGAGGATATTGATCTGATGGAAGCTATGAAAGTGAACAGCTACCGGTTTTCAATATCATGGGCAAGAATTCTACCACAAGGTAGATTTGGAGAAGTTAACTTGGCGGGTATCAACTACTATAACAGACTTATAGATGCGTTGCTACTCAAAGGTATCCAACCGTTTGTTACATTGTTTCACTTTGACATCCCTCAAGAACTTGAGGACAGATACGGAGCTTGGCTAAGTCCCCAATCACAGGAAGATTTTCAATTCTTTGCAGATATCTGTTTTAAATTCTTTGGTGACAGAGTCAAGTACTGGGTGACTTTCAATGAGCCGAATTATATAATCTCACTTGCTTACCGCGAAGGTACATTTCCACCATGTCGCTGCTCTGGCATATTTGGAAATTGCAGTGAGGGAGATTCAGAGAAAGAACCCTTTGTGGCTGCCCATAATATGATCCTATCACATGCAGCTGCAGTTGATCTTTATCGAAACAAATACCAGAATGAGCAAGGGGGGAAAATTGGAATAGTCTTACACTGCGACTCGTTTGAGCCATTAAGTAATTCCACATCAGATAAGTTGGCAACCGAAAGGGCGCAATCATTCAGCATTAATTGGATCTTGGATCCAATCTTATTCGGTAAGTACCCAAAAGAGATGGAGATGATTCTAGGAACCATCTTACCTAAATTTTCCAGTAATGACAAAGTAAAACTGAGGAGAGGACTGGATTTTATTGGCATCAACCACTATGCAAGTTATTATGTCCGAGACTGCTTATCATCGGTATGTGGACATGGGATAGGAGTCTCCAGAACAGAGGGCTCATATGAGCTAACTGTACTAAAAAATGGTGTCCCAATTGGAGAGCTTACTCCATTTGAATGGCTCAATGTTCACCCAGAAGGCATGAAGAAAATTGTTATCTATCTAAAAGACAGATATAATAACACTCCAATGTTCATTGCGGAAAATGGATATGGTACTTTGTATGATCCAAATGTTACTGAGAAAGAATATCTGAATGATTATAAGAGAATAGAGTTCATGTCTGGTCACTTAGATAATCTAATGGCAGCAATAAGGGAAGGAGCAGATGTGAGAGGTTACTTTGTTTGGTCCTTGCTCGATAACTTTGAATGGAAATATGGGTTTACAGTAAGATTTGGACTTTACCACGTCGATTTTTCCACACTGAAGAGAACACCAAAACTATCAGCAAGTTGGTACAAGTTTTTCATTGAAAAGTATATAGCTGACAACACAAAAAGAAACATTCTCAGAAAAACTGGGGAAGAGAATAATACAAGTACATCATACCCAATACAGCAGTAG 2775 0.4223 MMSLVKYSAWPLTNPATLSHMVPRPQFCTFPSLNNVQHCTQPSLSSLKPLHISSVEKFGLSANLGRRVTECRAYEADRSRPLELNIELNGEGERIEATQRVKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLISTLSLAAGSLMMLISWATRVADVPKVNLEFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPVPVYLSLVPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSILSLLILTPLAIAVEGPKLWAAGWQEALSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPIQPVNALGAAIAILGTFLYSQEDNAMGFCGYKEGLVLEIMLFLFMCSLLPISLGLDPSPPFLFGTASSSYQYEGAYSSDGKGLSNWDVFSHTAGSIDDGSNGDVSVDQYHRYQEDIDLMEAMKVNSYRFSISWARILPQGRFGEVNLAGINYYNRLIDALLLKGIQPFVTLFHFDIPQELEDRYGAWLSPQSQEDFQFFADICFKFFGDRVKYWVTFNEPNYIISLAYREGTFPPCRCSGIFGNCSEGDSEKEPFVAAHNMILSHAAAVDLYRNKYQNEQGGKIGIVLHCDSFEPLSNSTSDKLATERAQSFSINWILDPILFGKYPKEMEMILGTILPKFSSNDKVKLRRGLDFIGINHYASYYVRDCLSSVCGHGIGVSRTEGSYELTVLKNGVPIGELTPFEWLNVHPEGMKKIVIYLKDRYNNTPMFIAENGYGTLYDPNVTEKEYLNDYKRIEFMSGHLDNLMAAIREGADVRGYFVWSLLDNFEWKYGFTVRFGLYHVDFSTLKRTPKLSASWYKFFIEKYIADNTKRNILRKTGEENNTSTSYPIQQ* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3092 924 SUPERFAMILY Multidrug resistance efflux transporter EmrE 143 237 - -
Vra7g3092 924 Pfam Glycosyl hydrolase family 1 431 896 IPR001360 GO:0004553|GO:0005975
Vra7g3092 924 Gene3D Glycosidases 426 905 - -
Vra7g3092 924 PRINTS Glycosyl hydrolase family 1 signature 722 736 IPR001360 GO:0004553|GO:0005975
Vra7g3092 924 PRINTS Glycosyl hydrolase family 1 signature 800 808 IPR001360 GO:0004553|GO:0005975
Vra7g3092 924 PRINTS Glycosyl hydrolase family 1 signature 823 834 IPR001360 GO:0004553|GO:0005975
Vra7g3092 924 PRINTS Glycosyl hydrolase family 1 signature 844 861 IPR001360 GO:0004553|GO:0005975
Vra7g3092 924 PRINTS Glycosyl hydrolase family 1 signature 868 880 IPR001360 GO:0004553|GO:0005975
Vra7g3092 924 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 431 445 IPR033132 -
Vra7g3092 924 SUPERFAMILY Multidrug resistance efflux transporter EmrE 294 391 - -
Vra7g3092 924 SUPERFAMILY (Trans)glycosidases 430 895 IPR017853 -
Vra7g3092 924 PANTHER GLYCOSYL HYDROLASE 405 898 IPR001360 GO:0004553|GO:0005975
Vra7g3092 924 Pfam Triose-phosphate Transporter family 102 390 IPR004853 -
Vra7g3092 924 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 102 392 IPR004696 GO:0016021|GO:0022857|GO:0055085
Vra7g3092 924 PANTHER BETA-GLUCOSIDASE 45 405 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3092 Vra-Chr7 50574308 50581466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3092 431 914 Glycoside Hydrolase AT4G21760 58.678 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3092 K05350 - gmx:100790658 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3092 7 50574308 50581466 Vra10g0991 10 15670164 15672569 PCT