Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3080 ATGGATTACGAAGAACCTCCTCCGTCTCCCTCTATCCCCTCTATCCGCTCTTCCTCCCTTCTCAAGGACATCTCCAACTTCACCACGCCCAGACGGCCACCTTTCTCTCTCACCACCGCCCCATCTCCCGCCACTCAATTCTTCACCGCCTCCAAACACGCACCCACTTCCTCTTCCTTCCACCGCCGTCCCAAAAAAGCATCCACTGCCACCGCAGCCAAGAAATTCAAGGCCTTCCAATTGGACCAGTCTCAGTCCTCCCGTAAGGCTCAAATCAAGAAGGAGCGCTCCCTCAAATCCCTCGCCAAGTCTCTCTCAGTATGGCTCAACTTTCTCCTCCAAAATCCTAATTCATGTGGCTGCCACTACTCAGCCGCAGATGCTTCCGCTCCCACTACCAATGGCAAGCGAGACGGCGCCCCGGTAATCTCCGTCGTCGGCGTCGATTCCGCCTGGCGCACTCCCAAGCGCCAGAGGAAATCCATGTCCAGTAAGGAAAATGCTGGGTCGGTGGCTGAGGTTCCTGATTCCTCATTCTCGCACCTCAGGGATTCTCTCAAGGACGTTTGCAGTTTTGATGATTTGAATCAGCGAATGAGCTTGTATTTCAGCCTCGCAGCTTGTAAGGAGATCTTCCTTCAAATGAATCGCGTCGCCAAGACAATTGACGAAGGAAGACTGAATATGAAGGCACATTGCCCTATAGTAACTGATGTTGGCTTGAAGGATAAGGCCACAAGAATTCTCACGTGTTATAATTCTACTTGGTTGCGAATTGGATTGTATGTAATTTTTGGGGGTGATTCCCTGGTGTTAAACGGTGATGTGGATTCTGATCATGATGCTGTGTTCTTGAGAATGGTCGTTGACAAGTTATTTTTTTCGCATGAGGGTTTAGCTAAAGCTTATGCTTATAACAAAATGGTTGAAGGCGTGTATAGGTCAGGTTACTATGAGAATTTGGGGAATGTGATATTGAAAAGAATTTTGTTGCTTGTGCTTGTTCTGGATAAAGCTAAATGCCAGAGTTACCTCCCTCTGGAGTATGGTATTGATGGATTGGATGGGGGTTCTCCTCTGTTATTCAAACCAGAATCCTGGATTAAATCAAGTAGTCAGCTGATTCATGAATTTCTATCATCTGACGTAATGCATGGAGAAGGCAATCTTCTAACACATTTGGTGATTTTAGGTTACAAATTATCTCATCAACAGGAACCTCTTGTCGAGTATGATTTCAGGATCAGAGATTTATTTGTAGATCTCCAAGATGGATTAAAACTGTGTAGAGCTATTCAGCTCTTGCAGCATAATTCTTCGATCCTCATGAAAATTGTAGTCCCCTCTGATACTCCTAAGAAAAAATTAGCAAACTGCAGTCTTGCCCTGCAATATATTAGGCAAGCTGGTGGGTCACTAGTTGATGAAGATGGCATGATGATTGTGGCAGATGATATTGCTAATGGAGACAGAGAACTTACAGTTTCCTTGCTCTGGAATATATTTGTTCATTTGCAGCTACCTCTTTTGGTTGATAAAGCAAGTTTAGGAGGGGAAATTTCTAAAATTCAAGGAGGCAAGGTTCCCGTAAACATTGCAAGTTCTAGCTCTATGGAATTGCTTTTGAATTGGATTCAGGCAGTTTGTGACAACTATGATTGTGAAATCGACAATTTCCATTCCCTTGTTGATGGCAAAGCTGTCTGGTGCTTACTTGATTATTACTTCCAGAAAGAACTTCAAAATTCTTGTTCGTTGAAGGAAGTTAGCATAAAAAGTGGCAAGTCATCAATTATGTCTGTTGATGAATATTCAGATGCACTGTATAATTTTATACTATCCCAAAAGTTGACTACATTACTGGGGAACTTCCCAGAGGTACTTCAAATTAGCGAGCTACTTCAATATAATGGTGCTTGCAGTGACCGAAGTGTGGTGATTTTGTTGGTTTTCCTGGCAAGCCAATTATTTGTCAAGAAAAATTTGGATCACTTAAATTTCCACAAACTCTTGGGTGATGACTGCCAAAGTCTGAACCATAGAAATTTGAGGATGCTAAGGTGCCTTTCAAATTCTGAATCCATACAAAAGCCTGATGCTTCCGATGTGCTTGACAATGAAGATGCTTCAAGAAAATTCAAGGCCATCCAAACTTGGTGGAAAGACATGGCTGAAAGAAACGGTCTCAACAAACAAGCTGCCCCTAATTTGAAGGGATCAAAAATCACTGAATGCAGCACCAACATCAGAAGAGAAAATGCTACAAAAACAATACAACTGCATCTCAGAGGATGGGTTGTACGGTGCAAGTTTCTGAAGATGGTAAATTCTATTACCCTTTTGCAAACTGTTTTCAGAGCTTGGCTAAAAGTGAGGCAAAAGTCAGCCTGTTTGATATTATCTACTGTTCAAGGCTGTGACTCTTCATGTGAAATATTGAAGCAATCAGAAACATATAAGAGATATGTCATGCTTTTCATGTATAGACGTTCCTTTTTGAGGTTAAAGAGCTCAGCACAGATTATCCAGAAAGCAGTTAGGAGTTGGCTCTATAGGAGGCATAAGAAAGAGTCTAGTACAAATCCGGATCTTTTGATTTCAGATATGGTAGTGGCTGCTCTTAATGTTCAGAAATTGGTCCCTGGTGGGATGGCACAATCTAGATATATTCATCAGCTAGATCAGAGAGCGAAAGACTTTTCCCAACTGAAAGTCACTTTACATCTTCAAACAAATGCAGCCACTATCATTCAGCTTGCTTGGAAAAAGTTCATGTGCTGCAAGTCTGCTCAGAAGCAACACCTGTTTGCAACTAAAATTCAACGAAATTTCCGTAGTTGGTTATTGAGAAAAAGTTTTTTAGAGCAGATTCAGGCTGTCGTAAAGATTCAATCTTATTTTAGAATGTGGAGATGTGTGAATGCTTTTCAGCTCTTCAAGATTGAATTTAAGGCAGCTGTTGTTATTCAATCATGTATGCGGGGTTGGTTGGCCCGAAAGATTGCTGGTGCACGTAGGAATCACCTATTTGCAACTAAAATTCAGTTAAATTTCCGCAGGTGGTTGTCGAGAAAAAGGGTTTTAAATCAGATTCAACGTGTCATAAAAATTCAATCATATTTTCGAATGTGGAGATGTTTAAATGCTTACCAGCACTTCAAAATTGAGTTTAAAGCAGCTGTTATCATTCAGTCTTGTTTACGGGGCTGGTTTGCCCGAAAAGATGCTTGTACGCGTAGGAAGGACATTGTTGAGATTCAAAGGCACTGCCGTGGTTGGCTTGTAAAGAGGGACTTCTTGTTCCAAAAAGACGCTGTAATAAAGATCCAGTGTGTCGTTCGAAGTTTGAAGTGCCAAAAGGCTCTGAATTGCCAGAAAGATGCTGCTTTGGAGATCCAGCGCTTTATAAGGGGGCATGTAACTCGGAATCAGCTATTAGGCAGCGCTTCCAAGCTACGCACAGCTATTTCTGTTAGTTGCAGCTCAAGACCATTTGGCTTTTGTAGTTTTCAATTTGAACTGTTCTTGTTTTCGGTTGTGAAATTGCAACGATGGTGGAAGGGTCTCCTGTTGCTGAAGTTAATGAATAAATCGGCCATCATTATTCAGTCATGTACCCGTGGGTGGATAGCCAGGCGAAATGCTACTCTTTATAGAAGCCATGTTGTCATCCAAGAAGATGCCGCGTTGGTGATTCAACGCTACGTTAGGGGACATTTAACTCGACATCGGATATTAGGTGGTGCTTCTAACCTAAGTGCAATCACTCCTGTTGGCTGCATCTCAGGGCCAGTTGGCTGCCGTAGTTTTCCACCAGATCAATTTTTGCTTTCAGTTGTAAAATTACAACGATGGTGGAAGGGTCTCTTGTTACAGACATTGATGACAAAATCTGCTGTTGTTATTCAGTCTTGTACTCGTGGGTGGATAGCCAGGCGAGAGGCTAATGTTCAGAGACGTCGGATTATTGTCATCCAATCCCACTGGAAAGGTTACCATGCACGTAAAGTTTCGAAAGAACAGTTGTTGGATTTGCGCTTGAGAATGCAGAAGTCTGCCAGAAATGTGGATGACAGCAAGCGTCTCATAAACAGACTCTTGGCAGCGCTTTCGGAGCTACTCAATATGAAGAGTCTTAGTAACATCCTTCATACTTGTTCAATATTGGACATGGCTACAGGGCACTCTCAGAAATGTTGTGAAGAACTTGTGGCTGCCGGGGCCATTGATACTTTGCTGCGGCTGATTCAAACAGTAAGCCGGAGTATACCTGATCAGGAGGTTCTAAAGCATGCTTTGTCAACTCTCCGAAATCTCGCCCGCTATCCTCATCTTCTACAAGTGTTGATCCAAAGTCGTAGTTCTGTACAGATAATTGTCATGGAATTATTGAGGAATAAAAACGAGGGTTACTTCGTTGCTTCTGAACTTCTGAAGAAGATATGTTCAACTGGCAAAGGCGTTGAGGCGATTTTGAAGTCCCCTGCTCTGCTAAAACGACTGCTAGGCCTTGTGGAGGACCTTAAACGGAAGGGAATTTACGAGAAAAGAAATCCTAGGGCTCCTAACCTGGTTATCAAAGAAAACAGAGAGAGAAGATTGAAGGAGGCTGCTGAGATTGTTAAACTGATAACAAGGGCATGA 4644 0.4261 MDYEEPPPSPSIPSIRSSSLLKDISNFTTPRRPPFSLTTAPSPATQFFTASKHAPTSSSFHRRPKKASTATAAKKFKAFQLDQSQSSRKAQIKKERSLKSLAKSLSVWLNFLLQNPNSCGCHYSAADASAPTTNGKRDGAPVISVVGVDSAWRTPKRQRKSMSSKENAGSVAEVPDSSFSHLRDSLKDVCSFDDLNQRMSLYFSLAACKEIFLQMNRVAKTIDEGRLNMKAHCPIVTDVGLKDKATRILTCYNSTWLRIGLYVIFGGDSLVLNGDVDSDHDAVFLRMVVDKLFFSHEGLAKAYAYNKMVEGVYRSGYYENLGNVILKRILLLVLVLDKAKCQSYLPLEYGIDGLDGGSPLLFKPESWIKSSSQLIHEFLSSDVMHGEGNLLTHLVILGYKLSHQQEPLVEYDFRIRDLFVDLQDGLKLCRAIQLLQHNSSILMKIVVPSDTPKKKLANCSLALQYIRQAGGSLVDEDGMMIVADDIANGDRELTVSLLWNIFVHLQLPLLVDKASLGGEISKIQGGKVPVNIASSSSMELLLNWIQAVCDNYDCEIDNFHSLVDGKAVWCLLDYYFQKELQNSCSLKEVSIKSGKSSIMSVDEYSDALYNFILSQKLTTLLGNFPEVLQISELLQYNGACSDRSVVILLVFLASQLFVKKNLDHLNFHKLLGDDCQSLNHRNLRMLRCLSNSESIQKPDASDVLDNEDASRKFKAIQTWWKDMAERNGLNKQAAPNLKGSKITECSTNIRRENATKTIQLHLRGWVVRCKFLKMVNSITLLQTVFRAWLKVRQKSACLILSTVQGCDSSCEILKQSETYKRYVMLFMYRRSFLRLKSSAQIIQKAVRSWLYRRHKKESSTNPDLLISDMVVAALNVQKLVPGGMAQSRYIHQLDQRAKDFSQLKVTLHLQTNAATIIQLAWKKFMCCKSAQKQHLFATKIQRNFRSWLLRKSFLEQIQAVVKIQSYFRMWRCVNAFQLFKIEFKAAVVIQSCMRGWLARKIAGARRNHLFATKIQLNFRRWLSRKRVLNQIQRVIKIQSYFRMWRCLNAYQHFKIEFKAAVIIQSCLRGWFARKDACTRRKDIVEIQRHCRGWLVKRDFLFQKDAVIKIQCVVRSLKCQKALNCQKDAALEIQRFIRGHVTRNQLLGSASKLRTAISVSCSSRPFGFCSFQFELFLFSVVKLQRWWKGLLLLKLMNKSAIIIQSCTRGWIARRNATLYRSHVVIQEDAALVIQRYVRGHLTRHRILGGASNLSAITPVGCISGPVGCRSFPPDQFLLSVVKLQRWWKGLLLQTLMTKSAVVIQSCTRGWIARREANVQRRRIIVIQSHWKGYHARKVSKEQLLDLRLRMQKSARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSILDMATGHSQKCCEELVAAGAIDTLLRLIQTVSRSIPDQEVLKHALSTLRNLARYPHLLQVLIQSRSSVQIIVMELLRNKNEGYFVASELLKKICSTGKGVEAILKSPALLKRLLGLVEDLKRKGIYEKRNPRAPNLVIKENRERRLKEAAEIVKLITRA* 1548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 1195 1222 IPR000048 GO:0005515
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 1318 1346 IPR000048 GO:0005515
Vra7g3080 1547 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1407 1440 IPR000225 GO:0005515
Vra7g3080 1547 PANTHER UNCHARACTERIZED 1005 1244 - -
Vra7g3080 1547 PANTHER UNCHARACTERIZED 1271 1545 - -
Vra7g3080 1547 PANTHER UNCHARACTERIZED 9 1000 - -
Vra7g3080 1547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1050 1104 IPR027417 -
Vra7g3080 1547 MobiDBLite consensus disorder prediction 49 69 - -
Vra7g3080 1547 MobiDBLite consensus disorder prediction 23 42 - -
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 933 962 IPR000048 GO:0005515
Vra7g3080 1547 Gene3D - 1350 1543 IPR011989 -
Vra7g3080 1547 Gene3D - 750 798 - -
Vra7g3080 1547 Gene3D - 1103 1155 - -
Vra7g3080 1547 Gene3D - 1194 1247 - -
Vra7g3080 1547 Gene3D - 1057 1102 - -
Vra7g3080 1547 Gene3D - 1293 1343 - -
Vra7g3080 1547 Gene3D - 1005 1056 - -
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 751 779 IPR000048 GO:0005515
Vra7g3080 1547 MobiDBLite consensus disorder prediction 49 65 - -
Vra7g3080 1547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 1001 IPR027417 -
Vra7g3080 1547 Gene3D - 399 507 IPR036872 -
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 982 1011 IPR000048 GO:0005515
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 1225 1254 IPR000048 GO:0005515
Vra7g3080 1547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1177 1245 IPR027417 -
Vra7g3080 1547 MobiDBLite consensus disorder prediction 153 172 - -
Vra7g3080 1547 Pfam Armadillo/beta-catenin-like repeat 1396 1441 IPR000225 GO:0005515
Vra7g3080 1547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 856 IPR027417 -
Vra7g3080 1547 Pfam Calponin homology (CH) domain 414 505 IPR001715 GO:0005515
Vra7g3080 1547 SUPERFAMILY ARM repeat 1364 1508 IPR016024 -
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 1125 1154 IPR000048 GO:0005515
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 1079 1108 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 1127 1145 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 1319 1336 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 1011 1027 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 958 976 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 1227 1244 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 1296 1314 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 1058 1075 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 937 953 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 1197 1214 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 837 854 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 984 1000 IPR000048 GO:0005515
Vra7g3080 1547 Pfam IQ calmodulin-binding motif 1083 1099 IPR000048 GO:0005515
Vra7g3080 1547 ProSiteProfiles Calponin homology (CH) domain profile. 384 506 IPR001715 GO:0005515
Vra7g3080 1547 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 9 1000 - -
Vra7g3080 1547 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 1005 1244 - -
Vra7g3080 1547 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 1271 1545 - -
Vra7g3080 1547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1275 1340 IPR027417 -
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 1056 1085 IPR000048 GO:0005515
Vra7g3080 1547 Gene3D - 909 953 - -
Vra7g3080 1547 Gene3D - 956 1002 - -
Vra7g3080 1547 Gene3D - 533 657 IPR036872 -
Vra7g3080 1547 SUPERFAMILY Calponin-homology domain, CH-domain 331 583 IPR036872 -
Vra7g3080 1547 SMART arm_5 1396 1441 IPR000225 GO:0005515
Vra7g3080 1547 SMART iq_5 1317 1339 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 1101 1123 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 1224 1246 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 1055 1077 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 909 931 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 1194 1216 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 955 977 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 834 856 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 1294 1316 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 1078 1100 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 750 772 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 932 954 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 1124 1146 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 1006 1028 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 981 1003 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 773 796 IPR000048 GO:0005515
Vra7g3080 1547 SMART iq_5 1029 1051 IPR000048 GO:0005515
Vra7g3080 1547 ProSiteProfiles IQ motif profile. 1295 1322 IPR000048 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3080 937 1131 Myosins gene family AT5G43900 31.472 4.66e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3080 K16743 - gmx:100817636 2482.6