Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3071 ATGGGTTGTCACGGCAGCAAGGAGAATAAATCAAACGCAGAATTCAGCTCTGCTTATGGATCAGGCACTCGCACTGGCAGTGGTAGTCAAAACACTGTTCAACCACCACCTACCACCACTGTTGCTCAGCCTCAAACATCACCTCCTCCCAAACCACAAAGACCGTCGGAACCAAAACCCAATCTTTCTCCGACCCAGAATGCGAGGGCGGTGCAGAAACCCGACACCACGATTCTGGGCAAACCCTTTGAGGATATAAAGAAGCACTACACTCTGGGGAAGGAACTGGGAAGAGGGCAATTCGGGGTAACGTATCTGTGCACGGAGAATGCCACCGGAATGACGTACGCCTGCAAGTCGATTCTGAAGAGGAAGCTGGTGTCGAAGGCGGACAGGGAGGATATGAAGAGGGAGATTCATATCATGCAGCATTTGTCTGGGCAGAACAACATTGTGGAGTTCAAGGGGGCGTACGAGGACAGGATGTCGGTCCACCTTGTAATGGAACTCTGCGCCGGCGGGGAGCTATTCGACCGGATCATCGCCCAGGGTCACTACTCCGAGAGAGCCGCCGCCTCACTCTGCCGCGCCATTGTCAACGTTGTTCACATTTGCCACTTCATGGGAGTCTTGCACCGCGATCTCAAGCCCGAAAATTTCCTGCTCTCTTCTAAGGACGACGACGCTACGCTCAAGGCTACTGATTTTGGACTCTCTGTCTTCATTGAAGAAGGGAAGGTATATCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCCGAGGTATTGCGTCGTAGTTATGGAAAAGAAATAGATATTTGGAGTGCAGGCGTCATATTGTATATTCTTCTCAGTGGTGTACCACCTTTTTGGGCTGAAACTGAGAAGGGAATATTTAACGCCATATTGGAAGGTGAACTTGATTTTGTAAGTGAACCATGGCCATCCATATCAGACAGCGCCAAAGATCTAGTCAGGAAGATGCTGACACAAGATCCAAAGAAGCGGATTACTTCTGCACAAGTCCTTGAACACCCGTGGATGAGAGAAGGTGGAGAGGCATCTGATAAACCAATCGATAGTGCAGTTCTTTCTAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTTGCATTAAAGGTTATTGCCGAAAATCTATCAGAAGAGGAGATTAAAGGTCTGAAAGCAATGTTTGCAAATATGGACACTGACAATAGTGGCACAATTACCTACGAAGAATTGAAGACTGGCTTGGCTCGAATTGGATCAACACTGTCTGAGGCTGAAGTGAAACAACTCATGGATGCTGCTGATGTTGATGGAAATGGCTCAATTGACTATCTTGAATTCATTTCGGCTACAATGCATAGGCACAGACTTGAACGTGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGGTACATTACTAGAGATGAATTGGAGACTGCTATGACCCAACATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTACGAGGAATTTTGTGCAATGATGAGAAGTGGAATGCCACAGCAGGGAGGGACAGCTAATCCACTGATTGGTTGA 1632 0.4651 MGCHGSKENKSNAEFSSAYGSGTRTGSGSQNTVQPPPTTTVAQPQTSPPPKPQRPSEPKPNLSPTQNARAVQKPDTTILGKPFEDIKKHYTLGKELGRGQFGVTYLCTENATGMTYACKSILKRKLVSKADREDMKREIHIMQHLSGQNNIVEFKGAYEDRMSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRAIVNVVHICHFMGVLHRDLKPENFLLSSKDDDATLKATDFGLSVFIEEGKVYHDMVGSAYYVAPEVLRRSYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFNAILEGELDFVSEPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSTLSEAEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPQQGGTANPLIG* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3071 543 Pfam EF-hand domain pair 396 456 IPR002048 GO:0005509
Vra7g3071 543 Pfam EF-hand domain pair 466 528 IPR002048 GO:0005509
Vra7g3071 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 533 - -
Vra7g3071 543 ProSiteProfiles Protein kinase domain profile. 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3071 543 CDD STKc_CAMK 89 347 - -
Vra7g3071 543 ProSiteProfiles EF-hand calcium-binding domain profile. 499 533 IPR002048 GO:0005509
Vra7g3071 543 CDD EFh_PI-PLC 396 529 - -
Vra7g3071 543 Gene3D Transferase(Phosphotransferase) domain 1 176 355 - -
Vra7g3071 543 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Vra7g3071 543 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Vra7g3071 543 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 50 533 - -
Vra7g3071 543 MobiDBLite consensus disorder prediction 1 80 - -
Vra7g3071 543 CDD EFh 470 528 IPR002048 GO:0005509
Vra7g3071 543 ProSitePatterns Protein kinases ATP-binding region signature. 96 123 IPR017441 GO:0005524
Vra7g3071 543 SMART serkin_6 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3071 543 MobiDBLite consensus disorder prediction 41 59 - -
Vra7g3071 543 SUPERFAMILY Protein kinase-like (PK-like) 87 356 IPR011009 -
Vra7g3071 543 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
Vra7g3071 543 Gene3D - 356 530 - -
Vra7g3071 543 Gene3D Phosphorylase Kinase; domain 1 92 175 - -
Vra7g3071 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vra7g3071 543 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Vra7g3071 543 MobiDBLite consensus disorder prediction 9 40 - -
Vra7g3071 543 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Vra7g3071 543 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Vra7g3071 543 SUPERFAMILY EF-hand 387 527 IPR011992 -
Vra7g3071 543 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Vra7g3071 543 Pfam Protein kinase domain 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3071 543 SMART efh_1 395 423 IPR002048 GO:0005509
Vra7g3071 543 SMART efh_1 467 495 IPR002048 GO:0005509
Vra7g3071 543 SMART efh_1 431 459 IPR002048 GO:0005509
Vra7g3071 543 SMART efh_1 502 530 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3071 Vra-Chr7 50448526 50452899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3071 1 541 EF-hand Containing Proteins AT4G04720 75.184 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra7g3071 Pkinase 3.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3071 K13412 - gmx:100812843 916.761