Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3045 ATGGCCACGTCAACCACACCCCTCCTACTTTCATGCTTCATGGTACACCTTGCTTCAACCTTTGTTTTTGCTCATTCAACAGGCAACAACTACTACAACAACACTCCCCAACCTCTGTCAAAGTACATTCCTAAGAAACCATTGCTCAATGTGATAGACTCTTGCTGGAGGGCCAGACCAAATTGGAGCTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGAGGCCACAGGAGGCAAATATGGTGCAATATACCATGTCTTTGATCCCTCTGATGACCCTGCAAACCCAAAACCAGGCACACTTCGTTATGGTGCAATCCAAAATGACCCACTCTGGATCATTTTCGACAAAGACATGGTCATTACACTGAAAAATGAGCTTATTATGAGTAGCAACAAGACCATTGATGGAAGAGGAGCAAAAGTGGAGATTGCTGATGGGCCTTGCGTTACAATATCAAATGTTAGCCATGTTATCATACATGGCATTAGCATCCATGATTGCGAACCGGCCAAGCCTGGCCTGAACACTCCTGACCATGTTGGCCATCGTTTAGGCTCCGATGGAGATGCCATCAGCATAATCGATTCCACCAATGTTTGGATTGATCATTGCTTTTTGGCTCGTTCCACCGATGGCCTGATTGATGTTATTCGTGCCTCAACCGCCATTACCATCTCTAACAATTACTTTACTCAGCACGACAAAGTTATGTTGCTAGGACACAGTGACCAATTCACAAAGGATAAAATAATGAAAGTGACAATAGCCTTCAACCAGTTTGCCAGTGGCCTAACTGAGAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGCGGTAGTGCTAACCCAACCATTTTAAGTGAAGGGAATTTTTATGTAGCACCGAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGTGAAGGAGAACTGGAAAAGTTGGAAATGGAGGTCTTCCAAGGACTTGTTTTTCAATGATGCTTATTTTGTACCCTCTGGAGTTGGAAGCTGTGCTCCAAATTACTCACCAACTCAATATTTTGCTGCTGCTCCAGCATACATGGTGCCTGCAATTACTCTCAATGCAGGCCCCACATATTGTACTGTTGGGAGAGCATGTTAG 1185 0.4422 MATSTTPLLLSCFMVHLASTFVFAHSTGNNYYNNTPQPLSKYIPKKPLLNVIDSCWRARPNWSSNRQALADCAIGFGKEATGGKYGAIYHVFDPSDDPANPKPGTLRYGAIQNDPLWIIFDKDMVITLKNELIMSSNKTIDGRGAKVEIADGPCVTISNVSHVIIHGISIHDCEPAKPGLNTPDHVGHRLGSDGDAISIIDSTNVWIDHCFLARSTDGLIDVIRASTAITISNNYFTQHDKVMLLGHSDQFTKDKIMKVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNFYVAPNDPNAKQVTKREVKENWKSWKWRSSKDLFFNDAYFVPSGVGSCAPNYSPTQYFAAAPAYMVPAITLNAGPTYCTVGRAC* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3045 394 Pfam Pectate lyase 130 312 IPR002022 -
Vra7g3045 394 Gene3D - 49 387 IPR012334 -
Vra7g3045 394 PANTHER PECTATE LYASE 1 393 - -
Vra7g3045 394 SMART amb_all 123 318 IPR002022 -
Vra7g3045 394 SUPERFAMILY Pectin lyase-like 50 385 IPR011050 -
Vra7g3045 394 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Vra7g3045 394 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Vra7g3045 394 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Vra7g3045 394 PRINTS Pollen allergen Amb family signature 193 214 IPR018082 -
Vra7g3045 394 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Vra7g3045 394 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Vra7g3045 394 PRINTS Pollen allergen Amb family signature 335 359 IPR018082 -
Vra7g3045 394 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Vra7g3045 394 PANTHER PECTATE LYASE 18-RELATED 1 393 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3045 Vra-Chr7 50261213 50262935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3045 9 394 Polysaccharide Lyase AT1G11920 62.564 7.97e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3045 K01728 - gmx:100807483 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3045 7 50261213 50262935 Vra10g0947 10 15303511 15305455 PCT