Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3043 ATGGAGGTTGTTGTCCCAAGAAGAAAACGCTCAAAAACTTCGCAAACTGAGGATAAGCTGACATTGTCTAGATGCTCGAAAGCTTACAGAAAATCGAAGAGAAAAGCTGAAGAAATGTCTGAGAATGGTGATAAGAAATCCGAACTGAAAGGGAAAGAAGGTGAGATGTGTTTAAAGAAGAATTGTGCAGTAAGGGTGACTAAAAAGAAGAGAAAGGTTCGAGAAAACTATATGTTTGATAATATAAAACCAAAGTTAGATGCCAAAGAAGATTCCTGTTTACCGAGGACAAGAAAACTACCATGCAAGAGAAGAGATGAGAAACAAAAGCTTACTGTCTCAAACAAGAAAAGGAAATATGAAGATGATTTCTTGAGTGATGATTTAGAAGATGAAGAAATGCTTGTTATCTTAAGATCAAAGAACAGGAGCAGATTGAGAAGAATGAATGATGTGAAGGATGTTGAACAAAAGCCTCGAATTTGTCATCAATGCATGAAAAAGGAGAGAACACTTTTTGTGCCTTGTACTAAATGCCCGAAAATGTACTGTATGCAGTGTGTGGATAAATGGTACTCTGATATGACAATAGAAGAAATTGCTGCAAGTTGTCCGTTTTGCCAGAAAAACTGCAATTGCAATGTTTGTTTGCGCGCAAGAGGATTGATTAAGACATCTAACAGGAACATAACTGATTATGAAAAAGCTCAGTATCTGCATTATATGATCAGTTTACTCCTACCATTTTTGAAACAAATTTGTCATGAACAAAGTCAAGAGGAGCTAATTGAAGCTAAAATACCAGGAAAACCTTCTTTTGAGAAGGAAATACCTCGAAGTCTTTGTGGCAACGATGAACGTGTCTATTGTGATCATTGTGCTACTTCAATTATTGATCTTCATAGAAGCTGCCCCAGTTGTTCCTATGAACTCTGCCTCAGTTGTTGCCAAGAAATACGTGATGGAAGAATTACACCCCGGGTGGAGCAGAAGTTCTCATATGTGAATAGGGGCTATGATTATATGCATGGTGGAGACCCTCTACCTGTGTCTAATGATTTCAGGACATCAGAATGTCAAACCAAGCTATCTAATGTGTGGAATGCTAAGAGTGATGGAATCATCCGATGTGCACCAAAGGAGTTGGGGGGTTGTGGAAGTGCTGCATTGGAGCTGAGACGTGTCCTACCAAGTGGCTGGATATCTGAATTGGAAATCAAAGCTCGCAGTACGCTGAAAATTTGGGAAGATGAAAACACAACTCTTAAGCTAGAAAAAGCAGCATCAAGCTACACCTCTTTGAGAAAGGAAGCTATTAAAGAAGACATAAATGACAATAATATCTACTGTTCAGAGTCAAGTAGCATTCAAAAAGGAGAGTTGTTACTTTTCCAAAAGCATTGGGCTAATGGCGAACCAATTATAGTTCGTGATGCCCTTAAACTGGGGACCGGTCTGAGTTGGAAGCCGATGGTAATGTGGCGAGCATTGTGTGAAAATAGGGCTTCAGAGGTCAGTTCAAAAATGTCAGAAGTAAAGGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATCGATACTCGCACATTTTTCAAAGGTTATATTGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCCCGCCACTGTGATGAGTTTATTCGGTCATTGCCATTCCAAGAGTACAGTGATCCTCGGAGCGGAATTCTCAATCTTGCTGCGAAGTTGCCAGCCCATGTCCTAAAACCTGACATGGGTCCGAAAACTTATATTGCCTATGGGATTAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTCAATATTTTAACCCATACAGCAGAGGTGATGTTAACTGATGAGCAGCACTTAATTATTTCAAAGTTGAAAGAAGCACACAAGGTACAAGATGAGAGAGAGCAGTGTGATGAAGAAAGGGTTACCAACAGCCTGAATTGCCGAACTTTCAAAGACAACAAAGTACGGATAGAAAACAAGGTAGTTTTCGGATCCAATGACATAGAGAAGCGTCCCATTGAAATTAATGGAAGGATATTTACAAATGGTGTACATGAAGAGGTCGCTTCTGCTATAGAGAATGAATCAACGGAAACAGGCAGTGCTCTATGGGATATCTTTCGAAGAGAAGATTCTAAGAAGTTAGAATCATATCTCAGGAAACACTCAAAAGAATTTAGACATACTTATTGTTCTCCAGTTGAACAGGTTGAACATCCAATTCATGACCAATGTTTCTATTTGACATGGGAGCACAAGAAGAAGCTGAAAGAGGAGTTCGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGGGAGGCTGTCTTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCGGTAGACTTTGTGTCTCCGGAAAACATCCATGAGTGTCTGCGTTTAACTAATGAGTTTCGCCAGCTTCCCAAGAACCACAAGGCTAGGGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGTCAGAGACCTAAAAGCTTTACTAAAGTTTTCATGA 2655 0.4008 MEVVVPRRKRSKTSQTEDKLTLSRCSKAYRKSKRKAEEMSENGDKKSELKGKEGEMCLKKNCAVRVTKKKRKVRENYMFDNIKPKLDAKEDSCLPRTRKLPCKRRDEKQKLTVSNKKRKYEDDFLSDDLEDEEMLVILRSKNRSRLRRMNDVKDVEQKPRICHQCMKKERTLFVPCTKCPKMYCMQCVDKWYSDMTIEEIAASCPFCQKNCNCNVCLRARGLIKTSNRNITDYEKAQYLHYMISLLLPFLKQICHEQSQEELIEAKIPGKPSFEKEIPRSLCGNDERVYCDHCATSIIDLHRSCPSCSYELCLSCCQEIRDGRITPRVEQKFSYVNRGYDYMHGGDPLPVSNDFRTSECQTKLSNVWNAKSDGIIRCAPKELGGCGSAALELRRVLPSGWISELEIKARSTLKIWEDENTTLKLEKAASSYTSLRKEAIKEDINDNNIYCSESSSIQKGELLLFQKHWANGEPIIVRDALKLGTGLSWKPMVMWRALCENRASEVSSKMSEVKAIDCLANCEVEIDTRTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRSGILNLAAKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHLIISKLKEAHKVQDEREQCDEERVTNSLNCRTFKDNKVRIENKVVFGSNDIEKRPIEINGRIFTNGVHEEVASAIENESTETGSALWDIFRREDSKKLESYLRKHSKEFRHTYCSPVEQVEHPIHDQCFYLTWEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDEAVRDLKALLKFS* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3043 884 MobiDBLite consensus disorder prediction 31 51 - -
Vra7g3043 884 ProSiteProfiles Zinc finger RING-type profile. 162 208 IPR001841 -
Vra7g3043 884 SMART cupin_9 563 847 IPR003347 -
Vra7g3043 884 SUPERFAMILY Clavaminate synthase-like 463 878 - -
Vra7g3043 884 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 882 IPR045109 GO:0032454|GO:0033169
Vra7g3043 884 MobiDBLite consensus disorder prediction 1 51 - -
Vra7g3043 884 Gene3D Cupin 443 856 - -
Vra7g3043 884 ProSiteProfiles JmjC domain profile. 582 847 IPR003347 -
Vra7g3043 884 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 11 882 - -
Vra7g3043 884 CDD cupin_RmlC-like 771 831 - -
Vra7g3043 884 Pfam JmjC domain, hydroxylase 727 830 IPR003347 -
Vra7g3043 884 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 158 227 IPR018866 -
Vra7g3043 884 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3043 Vra-Chr7 50243168 50248511 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra7g3043 JmjC 5.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3043 K15601 K21989 gmx:100797860 1353.58