Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3039 ATGGAGGGTGGTTCTAACGAGGCTTCTAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGACATCATCCATTAAATCCTAATCTTAATAATCCCAATCGTAATCTTAATGAAAACACAGACACAAACACTCTCTTCATTCCCATGCCTATTACTAATAAGAATCACCACCCAAACCGTAATAGCATCCACAACATTAACCACAACACCAACACCTCTGAGTTAGGGTATTTCATGGAGATCCACAACCGCAACACGAACGACAACAACGATGGAAGTTCCTCTTCTTCTTCTTCTTCCGCTGTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGCAGGTTGGGGCGCCACCTGAAGTGGTGGCAAGGCTAGAAGAAGCATGTGCATCTTCTGCTGTGACTATGGCAGGTGGAACTGCTAGAATCGGTGAGGATCCGGCGCTGGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGACGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTACTATTTCTTCTTCCGATACTGACGGTGGTAGGAATGGAACGTCTGAAGAAATTGATGTAGAGAACAACATAATAGATCCACAGGCAGAGGAGCAAGAACTGAAAGGTCAACTGTTGCGTAAGTATCGGGGATACCTAGGTAGTTTGAAGCAGGAATTCACAAAGAAGAGAAAAAAGGGGAAGCTGCCGAAAGAAGCAAGGCAACAATTACTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCACTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCTGAGGACATGCAATTCGTGGTGGTTGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTTGCCAATCCCTTTCCCGATCTCTCCCACACAATGCTCTAG 1101 0.4559 MEGGSNEASSVMGFGENTSSSGVCPMMMMPLVTSHHGGHHPLNPNLNNPNRNLNENTDTNTLFIPMPITNKNHHPNRNSIHNINHNTNTSELGYFMEIHNRNTNDNNDGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKQVGAPPEVVARLEEACASSAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELSKPFKDAMLFLQRIECQFKSLTISSSDTDGGRNGTSEEIDVENNIIDPQAEEQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLANPFPDLSHTML* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3039 366 Pfam ELK domain 249 269 IPR005539 GO:0003677
Vra7g3039 366 SUPERFAMILY Homeodomain-like 271 347 IPR009057 -
Vra7g3039 366 Pfam KNOX2 domain 171 217 IPR005541 GO:0003677|GO:0005634
Vra7g3039 366 MobiDBLite consensus disorder prediction 1 20 - -
Vra7g3039 366 ProSitePatterns 'Homeobox' domain signature. 307 330 IPR017970 GO:0000981|GO:0006355
Vra7g3039 366 Pfam KNOX1 domain 118 159 IPR005540 GO:0003677|GO:0005634
Vra7g3039 366 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 356 - -
Vra7g3039 366 SMART KNOX1_2 117 162 IPR005540 GO:0003677|GO:0005634
Vra7g3039 366 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Vra7g3039 366 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Vra7g3039 366 SMART ELK_2 249 270 IPR005539 GO:0003677
Vra7g3039 366 SMART HOX_1 271 336 IPR001356 GO:0003677
Vra7g3039 366 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Vra7g3039 366 CDD homeodomain 281 333 IPR001356 GO:0003677
Vra7g3039 366 ProSiteProfiles ELK domain profile. 249 269 IPR005539 GO:0003677
Vra7g3039 366 Gene3D - 274 336 - -
Vra7g3039 366 PANTHER - 3 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3039 Vra-Chr7 50201568 50206584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3039 95 366 Homeobox Transcription Factor Family AT1G62360 73.958 4.31e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra7g3039 KNOX2 7.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3039 - - gmx:100127401 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3039 7 50201568 50206584 Vra10g0932 10 15208895 15214794 PCT