Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3035 ATGAGTCAACTCGGTCTCATTTTACAGGAATCGCTCCGCACAGAGAGAGAAGCAAGAACCATCCTGGGTATGTTAACGGACCAAATGGACGCCGTCGATGGAGCTCAACGGAGGAGACGCACGTTCAAAGAACGCCTCAGATTCTCCGGAATGGGCTGCTGCGGGGCCACCTGGGTTTTCCGACCAACGCTAAGGGACGAAGGAGGACCACCGCCACCACAACCACAAATACTACAACAAACAAACCCGGGTCAAGATTCGAACCCGAACAGGCCCGAATGCGTTGGTCCGAGAGGGTCGGGTTCGGGCATGAATCTTGCGGCGGCGCTGGCGGCGGAGAGGCAGCTGCGAGAATCTGAAGAGGGGAGGATGTCGTTGATGCGGCTGTTGGAGGAAAAGGAGGGTGGTGAGGATGCGGCTGTGGATAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGGGCGGCATTTATCCCGTGTGGACACACTTTCTGTAGAGTGTGTTCGAAAGAAATGTGGTTGAAGAGAGGTACTTGTCCCCTTTGTAACCGTTCCGTTCTCGACATTCTCCACATCTTCTGA 588 0.5493 MSQLGLILQESLRTEREARTILGMLTDQMDAVDGAQRRRRTFKERLRFSGMGCCGATWVFRPTLRDEGGPPPPQPQILQQTNPGQDSNPNRPECVGPRGSGSGMNLAAALAAERQLRESEEGRMSLMRLLEEKEGGEDAAVDNDSVCCVCMGRKKGAAFIPCGHTFCRVCSKEMWLKRGTCPLCNRSVLDILHIF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3035 195 MobiDBLite consensus disorder prediction 62 99 - -
Vra7g3035 195 SMART ring_2 147 184 IPR001841 -
Vra7g3035 195 PANTHER OS01G0917900 PROTEIN 17 195 - -
Vra7g3035 195 SUPERFAMILY RING/U-box 141 191 - -
Vra7g3035 195 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Vra7g3035 195 CDD RING-HC 147 184 - -
Vra7g3035 195 Pfam Zinc finger, C3HC4 type (RING finger) 144 189 - -
Vra7g3035 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 192 IPR013083 -
Vra7g3035 195 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3035 Vra-Chr7 50170534 50171349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3035 21 195 C3H Transcription Factor Family AT4G22250 48.500 4.36e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3035 - - gmx:100792613 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3035 7 50170534 50171349 Vra10g0923 10 15098380 15099436 PCT