Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3028 ATGAACTTTGGCAGAGCTTCAATGGGAGGCTCATGTTTCCATGCGCTTCGTTTGAGGAGGTTCAAGAGTAAGCCTCTGCCAGAACCCTCTTCTTCTTCGAGGGCAAGGTTGGATTCTGACTTGGAGAACATGGAGAGAAGAAGGTTTGACAGCTTGGAATCATGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAAGCATCAAAGGAGGATCAAGAAGAATGGACTGCTGACCTTTCCCAACTTTTCATAGGTAACAAATTTGCTTCTGGTGCTCACAGTAGGATATACCGCGGAATTTACAAGCAGAGAGCCGTTGCTGTAAAAATGGTGAGGATTCCCACACAGGACGAGGAGAGAAGAGGCTTGCTCGAACAGCAATTCAAGTCAGAAGTTGCTTTACTTTCACGTCTCTTTCACCGTAACATAGTGCAGTTTATTGCAGCTTGTAAAAAACCGCCAGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAACCATACTCTCTTTCCACAGAAACCATACTACGGTTAGCTCTTGACATATCAAGGGGCATGGAGTACCTTCATTCGCAAGGTGTGATCCACAGAGACCTAAAGTCAAATAACTTGCTTCTCAACGATGAGATGAGGGTTAAGGTGGCAGACTTTGGAACATCGTGTCTCGAAACACGGTGTCGGGAGACCAAGGGAAACATGGGAACATATCGTTGGATGGCCCCTGAGATGATTAAGGAAAAACCTTACACTCGTAAAGTTGATGTCTACAGCTTTGGAATTGTGCTCTGGGAGCTCACCACTGCTTTACTTCCATTCCAGGGAATGACCCCTGTTCAAGCTGCTTTTGCTGTTGCCGAAAAGAACGAAAGGCCTCCACTTCCTGCTAGTTGCCAACCAGCGCTTGCCCATCTGATAAAACGTTGTTGGTCAGCGAACCCTTCAAAGAGGCCAGATTTCAGTGACATTGTGTGCACTCTGGAGAAGTACGATGAGTGCGTGAAGGAGGGTCTTCCTCTGACTCATCATTCAGGCCTTGTCAGCAAAAACATCATCATCGAACGCTTAAAAGGTTGCGTCTCTATGAGCTCTTCCATACCTGTACAGGCTTGA 1146 0.4607 MNFGRASMGGSCFHALRLRRFKSKPLPEPSSSSRARLDSDLENMERRRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRGLLEQQFKSEVALLSRLFHRNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSGLVSKNIIIERLKGCVSMSSSIPVQA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3028 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vra7g3028 381 Gene3D Transferase(Phosphotransferase) domain 1 167 354 - -
Vra7g3028 381 PRINTS Tyrosine kinase catalytic domain signature 162 175 IPR001245 GO:0004672|GO:0006468
Vra7g3028 381 PRINTS Tyrosine kinase catalytic domain signature 200 218 IPR001245 GO:0004672|GO:0006468
Vra7g3028 381 PRINTS Tyrosine kinase catalytic domain signature 246 256 IPR001245 GO:0004672|GO:0006468
Vra7g3028 381 PRINTS Tyrosine kinase catalytic domain signature 265 287 IPR001245 GO:0004672|GO:0006468
Vra7g3028 381 PRINTS Tyrosine kinase catalytic domain signature 309 331 IPR001245 GO:0004672|GO:0006468
Vra7g3028 381 SUPERFAMILY Protein kinase-like (PK-like) 62 338 IPR011009 -
Vra7g3028 381 SMART serkin_6 84 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3028 381 Gene3D Phosphorylase Kinase; domain 1 73 166 - -
Vra7g3028 381 Pfam Protein tyrosine and serine/threonine kinase 86 337 IPR001245 GO:0004672|GO:0006468
Vra7g3028 381 CDD STKc_MAP3K-like 91 335 - -
Vra7g3028 381 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 17 369 - -
Vra7g3028 381 ProSiteProfiles Protein kinase domain profile. 84 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g3028 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3028 Vra-Chr7 50111639 50114422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3028 8 372 MAP Kinase Kinase Kinase AT1G62400 83.200 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra7g3028 PK_Tyr_Ser-Thr 1.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3028 - - gmx:100803225 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3028 7 50111639 50114422 Vra10g0915 10 15029810 15034351 PCT