Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3018 ATGTCTATGATTGAAACCCCCGCCGTCCACCACCTCAGCGGGGGCGCCACCGATCATCACCGTCACTCGTCTAAACGCAAACTCGACGAAGAAGATGACGGAGATTTCTCGGACTTAGTCTGTGTGAGGATGCGGAAAGAGGAGGCTGTGAATTCATGGTCGAGCTCCTCCGGCGCTTCTGGCGCCGCCGGAAGCGGCTGCTCCGTGGCCGTGCAGAAGCCGCGATCGCACATCCAGTTCTTTGTGCGAATGATGTCAGCCGGAAACACTATTGTGATGCAGGCTTTCCCCGAAGACAGCGTGAAATCGATTCATGAGCGTATCCAAAGCATGAAGGGAATTCCGGTGTTTGAACAGAGATTAATTTATCGGGGGAAGCAGCTTCAGTGGGAGCAGACTCTCGCTGAATGTTCCATTCAAAACGACGCCAATCTTCAACTCGTTGGTCGCATGCGCAGTACTGAACATCCTCAGGCATGGCAAATTATCAACGACATGGTTTCCCTCGTGTATCGACTTTGTTGTGGTGAGACTGTTCACGATTCCTTGAAGACTATCAAGGGGTTAATCACCAGTTACTTGAACATGACTCCGAGGATTGACAACGAATCTGCTTCTGGGTATTTTCAGATTTTCATGTCTTCTTCTGCTCCTGACGTGCTTGTTATGCTCTATGTGTCCCCTTATGCAGGTAACAAGGATTGTGCCGAGTCTTCTGTTAGACACTTTTTGAGTTCTTGCCGAAATACCTTGTCTAAGGCATTGCATGGGCAGTGTGCATGTGTGGTCTTAGAGTTCTGTAAATTGCTTAGGAGAGTTGGAAGTAATGACCCTTTGTATCTCTATTGCCGGAGTACCTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTACGCTGGTTCTGATAATGCTAAGGGGTTAGTTTTGATTAAGGACATTTTCCCCTTTGTTTTTGAGCTTGTTAATTGCTTGTTGATGGACTTGGACTCGAGTATGGAATCCCACAGAGCCGTGGGGCCTTTGTCTAATGATGTTGTGGATTTTACTGCCTTCTTAGTGCCTTTGAGAACTGGAATCAAGGAGCAACAAGCTGTCAATGGTTCTATGGCTCAAGACAAAAGCAATAAGGATCTCTTGCACGCCAAAGAGATTGAATATCTTCACTGTTTGTACATGCAGTTATTGAACAAAATCGACCAATGCCTTCAAAAAATGGACCAGAGCTTGGCTGGCCAGGAAATGATGGAAGGGGATAATCTTTATCCTGGGTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGAGGCGACATAGAAATGTGGTGTGTCTGTTGATTGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTTTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTCAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGGCTGAGTCTTTTGAATACATAGCGCGTGCTGAGCCTGAATCTCTACATGCTGGTTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCACTTTTTGTGGCATGCCCAACTGACCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTAATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAGCTATATTGTTTTAGAGGATATCAGGAGCGCGGACCCTTGTCTGTATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGAATTAGGACTGACATTTGTTAGAGAGGTGGAGGAGTTAGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGGGGAAAGAACCTTGTAGTTAATAGTAAGAACAGGGATAAGTATGTTGAACTTCTTATACAGGATCGCTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCCAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCACGGGAGTGAAGACACCCTTTCTGTTGAGGATTGGAAAGCACACACCGAGTATAATGGTTACAGTGAGACAGATATTCAGATCTCTTGGTTTTGGGAGATTGTTGGGAGTATGACAGCTGATCAAAGGAAGGTTCTTCTATTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTTCGTGGTTTGGCTTCTCGACTCTATATATACAGATCCCTCGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTATGTTTCCCTGCTTATTCATCTATGGCTGTCATGAAAGAACGTCTCGAACTCATCACTCAAGAACACATTGGGTGCAGTTTTGGTACTTGGTAA 2607 0.4465 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSDLVCVRMRKEEAVNSWSSSSGASGAAGSGCSVAVQKPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMTPRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAGNKDCAESSVRHFLSSCRNTLSKALHGQCACVVLEFCKLLRRVGSNDPLYLYCRSTFGSLLETAGVSYAGSDNAKGLVLIKDIFPFVFELVNCLLMDLDSSMESHRAVGPLSNDVVDFTAFLVPLRTGIKEQQAVNGSMAQDKSNKDLLHAKEIEYLHCLYMQLLNKIDQCLQKMDQSLAGQEMMEGDNLYPGWSHYLSILKELYQISKLYDGAEEKLWSVLRRHRNVVCLLIVRYAKRTDEHQWILEHRFVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPTDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGSYIVLEDIRSADPCLYTSCKQILDMDADFIDSDELGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVELLIQDRFVTSISEQVSHFAKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTLSVEDWKAHTEYNGYSETDIQISWFWEIVGSMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSMAVMKERLELITQEHIGCSFGTW* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3018 868 Gene3D Hect, E3 ligase catalytic domains 508 733 - -
Vra7g3018 868 Gene3D Hect, E3 ligase catalytic domain 752 867 - -
Vra7g3018 868 ProSiteProfiles Ubiquitin domain profile. 78 154 IPR000626 GO:0005515
Vra7g3018 868 PRINTS Ubiquitin signature 89 109 IPR019956 -
Vra7g3018 868 PRINTS Ubiquitin signature 110 130 IPR019956 -
Vra7g3018 868 PRINTS Ubiquitin signature 131 152 IPR019956 -
Vra7g3018 868 SUPERFAMILY Hect, E3 ligase catalytic domain 503 854 IPR035983 GO:0004842
Vra7g3018 868 SMART ubq_7 78 150 IPR000626 GO:0005515
Vra7g3018 868 SMART hect_3 526 866 IPR000569 GO:0004842
Vra7g3018 868 MobiDBLite consensus disorder prediction 14 32 - -
Vra7g3018 868 Gene3D Hect, E3 ligase catalytic domain 628 710 - -
Vra7g3018 868 CDD HECTc 507 866 IPR000569 GO:0004842
Vra7g3018 868 SUPERFAMILY Ubiquitin-like 64 153 IPR029071 -
Vra7g3018 868 Pfam Ubiquitin family 81 152 IPR000626 GO:0005515
Vra7g3018 868 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 67 866 - -
Vra7g3018 868 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 67 866 - -
Vra7g3018 868 MobiDBLite consensus disorder prediction 1 32 - -
Vra7g3018 868 Gene3D - 71 166 - -
Vra7g3018 868 Pfam HECT-domain (ubiquitin-transferase) 557 860 IPR000569 GO:0004842
Vra7g3018 868 ProSiteProfiles HECT domain profile. 528 868 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3018 Vra-Chr7 50030987 50039856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3018 78 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 3.45e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3018 - - gmx:100789233 1552.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3018 7 50030987 50039856 Vra10g0901 10 14897763 14903752 PCT