Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3012 ATGGTTTCTGCGGAGAATGATTCGCATTCCACTTCCGATCAAGCTACTCATAATCATTCCTCCGTTTCCGACAAAGCTCACAGAACCATCGGCAAGTCCATGCGAACCGTGCGCTCAAAATTATTCCGACGCGACCACGCCACGTGCGTCTCCGATAGCCTAACCGATTCTCTCATGGAACTCGCCTCGCGAAACTCAAAGTCAGTTAAATCTTCCGTTACGGAGGAGCAACTTCTCGAGCTCTCTCAAGCTTTGAGCGATTTCTCTGCTTGCAGCAGCGACATCTCTGGAGAGCTCCAGAGGCTCGCCACCGTCTCCTCCTACGAACCTGCAGTTGACGGGGATCGCGAGCCCGAACCTGAGCCCGAGCCTTGCCTAGGGTTTCTCCAACGGGAGACTTTCTCCACGGAGATAATCGAGAGTATCTCGCCGGAGGATCTTCAGCCCACGGTGAAGATCTGCGTCGACGGGCTGCATTCTCCATCGGTGGCGGTGAAGCGATCGGCGGCGGCGAAGCTGAGGCTGTTGGCGAAGAACAGAGCGGACAACCGCGCTCTGATCGGCGAGTCCGGTGCGGTGCCTGCTCTGGTTCCGCTGCTCCGGTGCAGCGATCCGTGGACGCAGGAGCACGCGGTCACGGCGTTGCTGAATCTGTCTCTTCTGGAGGAGAACAAGGCGCTGATAACCAATGCTGGTGCGGTGAAGTCGCTGATTTACGTTCTTAAAACAGGGACGGAGACTTCGAAGCAGAACGCGGCTTGCGCGCTGATGAGTCTTGCGTTGGTGGAGGAGAACAAGATCTCTATCGGTGCTTGCGGGGCGATACCGCCGCTGGTTTCGCTGCTATTGAATGGCTCCCACAGAGGGAAGAAGGACGCACTGACGACGCTGTATAAGCTCTGCTCGGTGCGGCAGAACAAAGAGAGGGCGGTGAGCGCGGGGGCAGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGGAAGGGAGCGGGATGGCGGACAAGGCGATGGTGGTGCTAAACAGCTTGGCGGGGATTGAGGAGGGAAAAGAGGCGATCGTGGAAGAAGGTGGTATTGCTGCGCTTGTGGAGGCGATCGAAGATGGGTCGGTGAAGGGGAAGGAGTTCGCTGTTCTGACTCTTGTTCAGCTCTGTGCTCACAGTGTTAATAACAGAGGCTTGCTTGTGAGAGAGGGCGGGATTCCTCCTCTCGTTGCTCTTTCTCAGAACGGCTCTGTTCGAGCTAAGCACAAGGCTGAGACACTCCTTGGATATTTAAGAGAATCAAGACATGAAGCATCCTGTTCAAGTCCCTAG 1311 0.5652 MVSAENDSHSTSDQATHNHSSVSDKAHRTIGKSMRTVRSKLFRRDHATCVSDSLTDSLMELASRNSKSVKSSVTEEQLLELSQALSDFSACSSDISGELQRLATVSSYEPAVDGDREPEPEPEPCLGFLQRETFSTEIIESISPEDLQPTVKICVDGLHSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLLEENKALITNAGAVKSLIYVLKTGTETSKQNAACALMSLALVEENKISIGACGAIPPLVSLLLNGSHRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEEGSGMADKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLVQLCAHSVNNRGLLVREGGIPPLVALSQNGSVRAKHKAETLLGYLRESRHEASCSSP* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3012 436 Gene3D - 290 432 IPR011989 -
Vra7g3012 436 MobiDBLite consensus disorder prediction 1 19 - -
Vra7g3012 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Vra7g3012 436 Gene3D - 136 289 IPR011989 -
Vra7g3012 436 SMART arm_5 386 426 IPR000225 GO:0005515
Vra7g3012 436 SMART arm_5 344 384 IPR000225 GO:0005515
Vra7g3012 436 SMART arm_5 221 261 IPR000225 GO:0005515
Vra7g3012 436 SMART arm_5 180 220 IPR000225 GO:0005515
Vra7g3012 436 SMART arm_5 262 302 IPR000225 GO:0005515
Vra7g3012 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 356 IPR000225 GO:0005515
Vra7g3012 436 MobiDBLite consensus disorder prediction 1 37 - -
Vra7g3012 436 Pfam Armadillo/beta-catenin-like repeat 264 302 IPR000225 GO:0005515
Vra7g3012 436 Pfam Armadillo/beta-catenin-like repeat 182 219 IPR000225 GO:0005515
Vra7g3012 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 233 IPR000225 GO:0005515
Vra7g3012 436 PANTHER U BOX DOMAIN-CONTAINING 21 432 - -
Vra7g3012 436 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 21 432 - -
Vra7g3012 436 SUPERFAMILY ARM repeat 148 425 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3012 Vra-Chr7 49967873 49971738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3012 66 429 U-box Gene Family AT2G23140 44.619 6.93e-84 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3012 - - gmx:100792402 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3012 7 49967873 49971738 Vra10g0894 10 14825332 14828270 PCT