Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3009 ATGCAAACTTCTCAGAAACACCCAACTTCGGCTGGTGTACACTTTTATCACCACCAGCCTGTGCAAGGCATGTACCACGTTTTACAGAGCGATCTATGCCACGATGCCCGTCATAGCAGCAGCAGCAGCAGCCAGGGAACAAGAGTTTCTTTTGAAAGCTGCAAGGAGCAATACTTCACTCTGGAATCATGCCCTGCACCAACTACTGGTTTTATGGAGGGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGAGTCCATTTTCTCCACAAGGTTCTCATTCATGCTATTCAGATCACCACCAATCCTCTGACAACACCTACGGATCGCCAATAAGCGGTTTGTCTAGCGTTGATGATGGGCATGAACTGAAGCACAAACTTAGAGAACTGGAGATTTCATTGTTGGGGCCTGACGAATCCGACATTGAAGACAGTTTTGGCTGCTGCGTCAAGGGCAGCAGACCCGACGGAGCATCTCAGTTGGGTAAACATAACTGGGAACAGATTGCTGAAAATATTTCACAATTTGACCTGAAAGGAGTCCTCAGGGTATGTGCGCAGGCCGTGTCTGATGAAGATGTTCCAACAGCAATAGGGTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGAGATCCGATTCAGAGGTTGGGTGCTTACTTGTTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGCATCTCATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCAAAGAACTGATGAGTTACATGCACATCCTGTACCAGATTTGCCCATACTGGAAGTTTGCATACATATCTGCAAATGCAATAATTACAGAAGCCATGGCTAATGAGTCCAGGATTCATATAATGGATTTCCAAATAGCGCAGGGCACACAGTGGTATTTACTTATCAAGGCTCTTGCAAATAGGCCTGGGGGACCCCCTTCCCTTCGGGTGACCGGTGTTGATGATTCGCATTCGATTGAAGCTCGAGGTGGAGGAATTGAGATTGTAGGAGAAAGGTTGTCAGAATTTGCGAGGTCTTGTGGAGTTCCGTTTGAGTTTCAGAGTGCTGCAATGTCTGGGTGTGAGGTTGTGCGAGGAAGTGTTGAAATTCGAGGCGGAGAAGCTCTAGCAGTAAATTTTCCATTTGTTTTGCACCACATGGCAGATGAGAGCGTGAGCACTGAGAATCACAGAGATAGATTGTTGAGGTTGGTAAAGAGCTTGTCTCCGAAGGTTGTTACCCTTGTGGAGCAAGAATCGAACACGAACACATCTCCTTTCTTTTACAGGTTTCTTGAGACCTTGGATTACTACAGTGCGATGTTTGAATCCATAGATGTGGCTTGCCCCAGAGATGATGAGAAGCGAGTGAGCGCAGAACAGCACTGTGTGGCACGAGACATTGTGAACATGATAGCTTGTGAGGGGGCTGAGAGAGTGGAGAGGCATGAACTTTTGGGAAAGTGGAGGTCAAGACTTTCCATGGCTGGATTTAAACAGTGCGAATTGAGCTCTTCTGTCATCGTTGCTACCCAAAATCTCCTAAACGACTTCAGTCAAAATTATAGGCTTCAACATAAAGACGATGCCCTTTATCTTGGTTGGATGAACAGACACATGGCTACCTCTTCAGCTTGGAGATGA 1659 0.4623 MQTSQKHPTSAGVHFYHHQPVQGMYHVLQSDLCHDARHSSSSSSQGTRVSFESCKEQYFTLESCPAPTTGFMEGDDSPSYASVSSKRSPFSPQGSHSCYSDHHQSSDNTYGSPISGLSSVDDGHELKHKLRELEISLLGPDESDIEDSFGCCVKGSRPDGASQLGKHNWEQIAENISQFDLKGVLRVCAQAVSDEDVPTAIGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGHLIYKSLKCEQPTSKELMSYMHILYQICPYWKFAYISANAIITEAMANESRIHIMDFQIAQGTQWYLLIKALANRPGGPPSLRVTGVDDSHSIEARGGGIEIVGERLSEFARSCGVPFEFQSAAMSGCEVVRGSVEIRGGEALAVNFPFVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFYRFLETLDYYSAMFESIDVACPRDDEKRVSAEQHCVARDIVNMIACEGAERVERHELLGKWRSRLSMAGFKQCELSSSVIVATQNLLNDFSQNYRLQHKDDALYLGWMNRHMATSSAWR* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3009 552 MobiDBLite consensus disorder prediction 70 118 - -
Vra7g3009 552 Pfam GRAS domain family 184 552 IPR005202 -
Vra7g3009 552 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 551 IPR005202 -
Vra7g3009 552 MobiDBLite consensus disorder prediction 78 116 - -
Vra7g3009 552 ProSiteProfiles GRAS family profile. 172 552 IPR005202 -
Vra7g3009 552 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 16 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3009 Vra-Chr7 49954091 49957079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3009 1 552 GRAS Transcription Factor Family AT4G17230 57.685 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra7g3009 GRAS 4.5e-120 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3009 - - gmx:100792931 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3009 7 49954091 49957079 Vra10g0891 10 14804634 14808242 PCT