Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3002 ATGGGTGGTGATGAGGCTCGACAATCATTGCTTTCAGAACATTCCAATGAGAAAAATGACCTTCAAAGGAGAAAGCCTAGAGGTGGTGATGGCTTGGAGAAGGAGGTCAAGTTCAAAGGAGAAAATGATGAACAAAAGCCTTTGAATCCTCAACGTACAGATGTAAAACCACTGGCAGAATTCCATTTCAGGCCAGTCTTGTTATGGTTAGCTGCATACCTAGGGGGAGGAACTATTTGCTTCCTTCTCACACAGCATCAGATTAAGGGCATAAAAACTAATGGCTTTCTTGATGCCATTTACTTCTGTGTTGTAACAATGACAACAGTTGGATATGGAGATCTTGTGCCAGATAGCCAACTGTCAAAACTTCTTGCTTGCATTTACGTCTTCACTGGAATGGCTCTTGTAGGTCTAATTCTTAGCAAGGCAGCAGATTATATTGTTGAAAAGCAGGAAATAATTCTAGTTAAAACCATATTCAAGGGTGAAAATATTGATCCAGAACAGCTTACCAAAGAGGTTGAAACCAACAAAGCTAAATACAAACTCATCCTGACAGCATCCATCTTTTTGGTGCTTATGATTGCGGGGACTATTTTTCTCTATTTTATTGAAAATCTAGATTTTGTTGATTCCTTTTATTGTGTTTGTTCCACAGTCACTACATTAGGTTATGGGGATAAGAGCTTTTCCACCACTGTTGGTCGTGCTTTTGCTGTGTTCTGGATATTGAGCAGCACTATTTGCTTGGCTCAGTCTTTTGCTTATATTGCTGAACATTATACCGAAAAAAGACAAAGGTCCCTTGCAAAAAGGGTTCTTGCACGAAAATTGTCCCACCTTGATCTTGAGGCAGCTGATCTTGATGGAGATCATGTAGTCAGTTCTACAGAGTTCGTTTTGTATAAGCTGAAGGAAATGGGAAAGATCAGCCAAGATGATATTTTAACTGTTCTGGATATTTTTAGACAACTAGATTTTGATCAATCAGGAACACTGACAGAAGCGGATCTCAGATATAACCCTGACTGA 1035 0.3942 MGGDEARQSLLSEHSNEKNDLQRRKPRGGDGLEKEVKFKGENDEQKPLNPQRTDVKPLAEFHFRPVLLWLAAYLGGGTICFLLTQHQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSQLSKLLACIYVFTGMALVGLILSKAADYIVEKQEIILVKTIFKGENIDPEQLTKEVETNKAKYKLILTASIFLVLMIAGTIFLYFIENLDFVDSFYCVCSTVTTLGYGDKSFSTTVGRAFAVFWILSSTICLAQSFAYIAEHYTEKRQRSLAKRVLARKLSHLDLEAADLDGDHVVSSTEFVLYKLKEMGKISQDDILTVLDIFRQLDFDQSGTLTEADLRYNPD* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3002 344 ProSiteProfiles EF-hand calcium-binding domain profile. 314 344 IPR002048 GO:0005509
Vra7g3002 344 Gene3D - 183 257 - -
Vra7g3002 344 Gene3D - 55 165 - -
Vra7g3002 344 SUPERFAMILY EF-hand 284 341 IPR011992 -
Vra7g3002 344 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 15 339 - -
Vra7g3002 344 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
Vra7g3002 344 MobiDBLite consensus disorder prediction 10 50 - -
Vra7g3002 344 MobiDBLite consensus disorder prediction 1 51 - -
Vra7g3002 344 SUPERFAMILY Voltage-gated potassium channels 60 150 - -
Vra7g3002 344 Pfam Ion channel 70 149 IPR013099 -
Vra7g3002 344 Pfam Ion channel 190 260 IPR013099 -
Vra7g3002 344 Gene3D - 258 341 - -
Vra7g3002 344 SUPERFAMILY Voltage-gated potassium channels 177 278 - -
Vra7g3002 344 PRINTS Two pore domain K+ channel signature 105 133 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vra7g3002 344 PRINTS Two pore domain K+ channel signature 222 231 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vra7g3002 344 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 15 339 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3002 Vra-Chr7 49925152 49927154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3002 44 339 Ion Channels AT5G55630 55.000 9.77e-117 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3002 K05389 - gmx:100799492 548.125