Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2995 ATGTTGAAGAAAAGAAAGAAATGCCGCGGTGGTGATGCTGTTTTCAGGGTGTTGCTCCGCCCTCCAAGCTCGTCGGAGAATTTTCTTTTTCTTCTTCTTGAAGTTTGCAGTTTTTTCCCTTTCATTGGCCATTCTTCTTCTGAGTTGAGAATGGGTAATGTGAACGTGCGTGGTTCTGAAGAAGAAGCAGAAGAAGCTTATGCTGATGGGAACGCTATGCCTCACTCTCCTCCTACTATCTCTCCCTTCGTATTCACTCCTCAGCTTCCTGAGGTTCCGCTACAAACACCTGAGGAGAGGCATGTCCCCAGTTATTCCTCGGTGGAGATAACTTCAGGGTATGAAGATATGTTCAGTGAACTGGGAATTCCAACTATGATTACTTGGAGTTATGGTGGAAAGGAAGTTTCTGCGGAGGGATCGTGGGATAATTGGAAAACAAGAATGCCCCTGCAGAGATCAGGGAAAGACTTTGCAATAATGAAGGTATTGCCATCTGGGGTTTACCAGTACAGATTTATTGTGGATGGACTGAGGAGGTATACTCCAGACTCGCCTTGGGCCCGTGATGATGCCGGGGATGCTTACAACATCTTGGACTTACAGGATTATGTTCCTGAAGATATTGGAAGCATTTCCAGTTTTGAGCCTCCTCAATCACCAGAGTCGAGCTATGATAACTTACAGCTTAGTTCCGAAGATTATGCTAAGGAGCCACCGTTGGTTCCTCCACTCTTGCAAATGACACTGCTCAATGTGCCTGGAACAAATATGGAAATCCAACCTCCTTTGTCAAGACCTCAACATGGAGTTCTGAATCATCTTTACACGCAGAAAGGAAAGAGCAGTCCTGCAGTTGTTGGTCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACTGTGGTGCTGTACAAGTCGTTGTAA 927 0.4542 MLKKRKKCRGGDAVFRVLLRPPSSSENFLFLLLEVCSFFPFIGHSSSELRMGNVNVRGSEEEAEEAYADGNAMPHSPPTISPFVFTPQLPEVPLQTPEERHVPSYSSVEITSGYEDMFSELGIPTMITWSYGGKEVSAEGSWDNWKTRMPLQRSGKDFAIMKVLPSGVYQYRFIVDGLRRYTPDSPWARDDAGDAYNILDLQDYVPEDIGSISSFEPPQSPESSYDNLQLSSEDYAKEPPLVPPLLQMTLLNVPGTNMEIQPPLSRPQHGVLNHLYTQKGKSSPAVVGLGTTHRFLAKYVTVVLYKSL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2995 308 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 59 308 IPR043554 -
Vra7g2995 308 SUPERFAMILY E set domains 123 208 IPR014756 -
Vra7g2995 308 Pfam Glycogen recognition site of AMP-activated protein kinase 123 202 IPR032640 -
Vra7g2995 308 SMART AMPKBI_2 218 308 IPR006828 GO:0005515
Vra7g2995 308 Gene3D Immunoglobulins 118 205 IPR013783 -
Vra7g2995 308 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 59 308 - -
Vra7g2995 308 Gene3D - 211 308 - -
Vra7g2995 308 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 236 306 IPR006828 GO:0005515
Vra7g2995 308 SUPERFAMILY AMPKBI-like 205 307 IPR037256 -
Vra7g2995 308 CDD E_set_AMPKbeta_like_N 124 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2995 Vra-Chr7 49864627 49878308 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2995 K07199 - gmx:100805688 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2995 7 49864627 49878308 Vra10g0872 10 14676791 14679694 PCT