Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2991 ATGACACGTTGTTCCAAAATTAAGTACTATAAATCTCGACACTTGCCAAGTACTCCAACGCTATCTCTCAACCCAACCCTTTCATTTTCATTTTCGTTTTTCAATCACTTCACTGTCACCATGGAAAATGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCACCAACTCTGCTGGGCTGAAGCTGTCAGTGCCAGACATGAACAACATGAACGTGAAGCAGGACAACAACAACAGCAACCACACAGCAGATGAGACCAATGAATGCACCGTGAGGGAGCAAGACCGTTTCATGCCAATCGCAAATGTGATTAGGATCATGCGAAAGATTCTCCCCCCACATGCCAAGATCTCTGATGATGCCAAAGAAACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAATGAGCGTTGCCAGAGGGAACAGCGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTTGAGGGTGACCGAACCTCCATGAGAGGTGAACCACTGGGGAAGAGGACTATTGAATACGCCCCTATGGGTGTTGGCGTTGGCGTTCCCGCTGCTTTTGTGCCTCCACCGTTTCACCCCAATGGATACTATGGTCCTGGCATGGGGACTTACGTTGCGCCACCAAACCCTGCGTCATCTCATCACCATGGAATGCCTAGCACTGAACCGAATTCTCGCTCCATGTGA 777 0.4903 MTRCSKIKYYKSRHLPSTPTLSLNPTLSFSFSFFNHFTVTMENGGFHGYRKLPNTTNSAGLKLSVPDMNNMNVKQDNNNSNHTADETNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGEPLGKRTIEYAPMGVGVGVPAAFVPPPFHPNGYYGPGMGTYVAPPNPASSHHHGMPSTEPNSRSM* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2991 258 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 98 162 IPR003958 -
Vra7g2991 258 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 43 199 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra7g2991 258 MobiDBLite consensus disorder prediction 238 258 - -
Vra7g2991 258 Gene3D Histone, subunit A 73 202 IPR009072 GO:0046982
Vra7g2991 258 MobiDBLite consensus disorder prediction 244 258 - -
Vra7g2991 258 PRINTS CCAAT-binding transcription factor subunit A signature 126 144 - -
Vra7g2991 258 PRINTS CCAAT-binding transcription factor subunit A signature 145 163 - -
Vra7g2991 258 PRINTS CCAAT-binding transcription factor subunit A signature 164 182 - -
Vra7g2991 258 ProSitePatterns NF-YB/HAP3 subunit signature. 129 145 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vra7g2991 258 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 43 199 - -
Vra7g2991 258 SUPERFAMILY Histone-fold 95 193 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2991 Vra-Chr7 49840419 49842932 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2991 41 256 CCAAT-HAP3 Transcription Factor Family AT5G47670 57.848 7.41e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra7g2991 CBFD_NFYB_HMF 8.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2991 K08065 - gmx:100194424 330.487