Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2971 ATGACAGAGGGTAGCAATCCAATATCTCCGGTGGACGGCATGGACGTGACCGACGGCGGCAAAGAGCAGCAGGCGGCGGGAGTGGGGATTCTCCTTCAAATAATGATGTTGGTTCTGTCTTTCGTGTTAGGTCACATCCTTCGTCGCAAGAGGATTTACGTTCTTCCCGAAGCCAGCGCTTCTCTTCTCATTGGCTTGCTCGTTGGTACACTCGCTAACATTTCTCACACTCAAACTAGTATCAGGGCGTGGTTCAACTTTCACGAGGAGTTTTTCTTCCTCTTCCTTTTACCTCCCATAATATTTCAGTCTGGCTTCAGTCTCTCGCCTAAACCTTTTTTCTCTAATTTTGGAGCTATTGTCACGTTTGCTATATTCGGCACCTTTCTGGCTTCCATTGTGACGGGTGTCTTAGTTTATGTTGGCGGATTGATGTACCTCATGTACAGATTACCTTTTGTTGAGTGTCTAATGTTTGGTGCACTGATATCCGCAACCGATCCTGTTACTGTTTTGTCCATATTTCAGGAGCTTGGCACAGACGTCAATCTTTATGCCTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCTATTTCTTTGTACAGGACAATGACAGTGATTAAAAGTCATCCATCTGGACAAAATTTCTTCATGGTCGTTGTTAGATTTTTAGAGACTTTTGTCGGGTCAATGTCTGCTGGTGTTGGAGTTGGTTTTGTATCTGCTCTACTATTTAAATATTCGGGGTTGGATATTGACAATCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCGTATTTCTCGTACATGCTTGCTGAAGGTCTTGGACTGTCTGGTATTGTATCAATATTGTTCACAGGAATGGTCATGAAGCATTACACATATTCAAATTTGTCACGTAGTTCTCAAAGATTCGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCTGAGACATTTGTATTTATCTACATGGGCTTTGATATTGCTATGGAGAAACATAGTTGGTCGCATGTTGGATTTATATTCTTTTCCATTATATTCATTGGAATTGCAAGGGCAGCCAATGTGTTCTCATGTGCTTATTTGGTCAACTTGTTCAGACCTGCCGGTCGACAAATTCCACGAAAACATCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCTTTTGCCCTTGCTCTGCAATCAATTCATGATCTGCCAGATGGACATGGACAGATCATCTTAACTGCAACTACTGCAATAGTTGTTTTGACGGTATTACTGATTGGTGGTTCAACAGGCACCATGCTGGAAGCTTTACAGGTTGTAGGTAGTGACAGTCCTATCATCGAGAGTCCTTTGGCTTCAGTTACCAGAACGAATTTTGAGGGAACCAACGGCTATCTTTCTCCCGAAGAGGAAGAAATATCATCAGGGAACAAAATCAAGATGAGGCTACAAGAATTTCAAAGAAGTGCTGCATCTTTTACCGCATTAGATAAAAACTACCTCACCCCATTCTTCACTAGTCAAAATGAAGATGAAGCTATGCCCCTCACTTTGGAGAACATGGGATTGGATGATGATGACCGTTACTCGTCATGA 1608 0.4216 MTEGSNPISPVDGMDVTDGGKEQQAAGVGILLQIMMLVLSFVLGHILRRKRIYVLPEASASLLIGLLVGTLANISHTQTSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGAIVTFAIFGTFLASIVTGVLVYVGGLMYLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMTVIKSHPSGQNFFMVVVRFLETFVGSMSAGVGVGFVSALLFKYSGLDIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGMVMKHYTYSNLSRSSQRFVSAFFELISSLAETFVFIYMGFDIAMEKHSWSHVGFIFFSIIFIGIARAANVFSCAYLVNLFRPAGRQIPRKHQKALWYSGLRGAMAFALALQSIHDLPDGHGQIILTATTAIVVLTVLLIGGSTGTMLEALQVVGSDSPIIESPLASVTRTNFEGTNGYLSPEEEEISSGNKIKMRLQEFQRSAASFTALDKNYLTPFFTSQNEDEAMPLTLENMGLDDDDRYSS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2971 535 Pfam Sodium/hydrogen exchanger family 36 439 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra7g2971 535 Gene3D - 153 205 - -
Vra7g2971 535 PANTHER SODIUM/HYDROGEN EXCHANGER 16 516 IPR018422 GO:0006812|GO:0015299|GO:0016021
Vra7g2971 535 PANTHER SODIUM/HYDROGEN EXCHANGER 6 16 516 - -
Vra7g2971 535 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 35 448 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra7g2971 535 PRINTS Na+/H+ exchanger signature 91 102 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra7g2971 535 PRINTS Na+/H+ exchanger signature 105 119 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra7g2971 535 PRINTS Na+/H+ exchanger signature 120 128 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra7g2971 535 PRINTS Na+/H+ exchanger signature 160 170 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2971 Vra-Chr7 49649911 49658480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2971 22 441 Antiporters AT3G05030 32.957 7.01e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2971 K14724 - gmx:100810105 877.47