Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2966 ATGTGGGAAAGAATATCAGTAGTTCTGCTGCTTGTTTTGAATTATGTGTTGGTTGCAAAAGGAGAAACAGATGATGTGGATTTTTCCACGCTTAAGTCTCTTATGAGTACCTGGAAGAACACCCCTCCAGAGTGGGAGGGTACAGATCCTTGTGAAGATTGGGAAGGAATCAAGTGCAGGAATACACGTGTTACATCAATAACACTGGCAAGTACTGGTTTGGGTGGTCAGCTTTCTGGAGATATTGGATCACTGTCTGAATTGGAGATTTTGGATCTATCTTACAACAAGGACTTGACTGGACCACTTCCACAATCCATCGGGGATTTGAGGAAGCTGTCAACCTTAATTCTTGTTAGCTGCAGCTTCAGTGGTCCTATTCCAGACAGCATAGGAAATATGCAGGAGCTCCTGTTCTTGTCTTTAAATTCCAATGGCTTTAGTGGAGTAATTCCGACTTCTATTGGTAATCTATCAAAGCTTTATTGGTTAGATTTAGCAGACAATCAACTTGAAGGGAGCATCCCCGTATCTGGTGATGGCACATTAGGTCTTGATAACTTACATCATGCCAAACATTTTCATCTTGGGAAGAATAATCTCTCAGGCACCATCCCTCTTCGACTGTTTAGCCCGGAAATGGCTCTCATTCATTTGCTTTTGGAAAGCAATAAACTCGTAGGGAAAATTCCATCTACACTAGGACTAGTTAAGAGTCTGGAGGTGGTGCGCTTAGATGGTAATTCATTGGATGGACCTGTGCCTTCAAACATCAACAATCTTACGAATGTTCGAGATCTGTACTTGTCCAACAATAAACTGTCAGGCTCCCCGCCAGACCTTACTGGAATGAATGCCCTCAGCTACCTGGACATGAGCAACAATAGTTTTACACCATTGGATTTTCCAGAATGGTTCTCTACTCTCAAGTCCTTAACGACATTAATGATGGAGCGAACACAACTTCAAGGACAGGTTCCCTCTTCTTTGTTTGAACTTGTCAATTTACAGACTGTGGTCCTAAAAGACAACAAAATAAATGGAACCTTGGATGTCGGCTCCTCCTACAGCAGCCGGCTGCGACTTATTGATTTGGAGACTAATTCAATTGACAACATTAAGCAAACTGAAGTTTCAAATGTCGTTATAATACTCAAAGATAACCCAGTTTGCCAAGAAACTAATGAACGAGGGACATATTGCTCCTCTTCTCAATCCAATTTCTCGTATTCAACACCACCAAATAACTGTGAACCTGGTGCCTGCAGTTCAGATCAGATTTCGAGTCCCAACTGTAAATGCGCATATCCATATACAGGAACATTAGCTTTCAGGTCACCTTCCTTTACGGACTTGGATAACAAAACACACTACTTAATGCTTGAGGATTCTCTGATGCGGTCTTTTAAGTCTCACTTTGTACCTGTGGATTCGGTTTTGTTGAGCCACCCAAGGAGAGATTCAACTGGGTATCTCAAATTGAGCTTACAAGTCTTCCCATCCGGACTAGATCATTTCAATCGAACAGGGACTTTAACAATTGGTTTTATGCTAAGCAACCAGACTTTTAAGCCTCCACAGCCGGATTTTGGACCATATTTTTTTCTTGCAGATGGATATGAACACTTTGGGAACTATGAAGGATTGAGTGAATCAAATAAACATTCAAACATTGGAATCATAATTGGGGCAGCAGTTGGTGGTTTGGTCTTGCTAGTGTTATTACTCTTAGCTGGTGTTTATGCTTTCCGCCAGAAGAAAAGGGCCGAAAAAGCGATTGGACAAAGCAATCCTTTTAGACGCTGGGATACGGTTGATAGCAAGAGTGATGTCCCTCAGTTGAAAGAAGCAAGAATGTTTACTTTTGAAGACCTTAAAAAATACACCAAAAATTTTTCTCAAGTCAATGACATTGGATCCGGGGGTTTTGGGAAGGTTTATAAGGGAACCCTTCCCGATGGACAAAGGGTAGCAATAAAAAGAGCTCAAAAAGAATCTATGCAGGGAAAGCTTGAGTTTAAAGCGGAGATTGAACTTCTATCAAGGGTTCACCACAAGAATCTTGTCAGCCTTTTGGGCTTCTGCTTTGACCAAGGAGAGCAAATGCTGGTTTATGAGTATCTTCAAAATGGAAGTTTAAAGGATGCTCTCTCAGGGAAGTCAGGAATTAAGTTAGATTGGATTAGAAGGCTAAAAATTGCCCTTGGTACTGCCAGGGGTCTGGCTTATCTTCACGAACTTGTTAATCCTCCCATCATACATAGGGACATAAAATCAAACAATATTTTGCTGGATAACCGCTTAAATGCCAAAGTTTCCGATTTTGGCCTCTCCAAGTCTATGGTAGATGCAGAAAAGGATCATGTTACCACCCAAGTTAAAGGAACACTGGGTTACTTGGATCCAGAGTATTATATGTCTCAACAGTTGACTGAGAAGAGTGACGTGTATAGCTTTGGAGTGCTAATGTTGGAGCTTATATCTGCAAAAAAGCCATTGGAGCGAGGGAAGTATATTGTGAAAGAGGTTAAGAATGCAGTGGATAAGACAAAAGGCTTATACGGTCTTCAAGAATTTATTGATCCAGCCATGGGATTGTCGTCCACAACACTGATCGGTTTTGACAAGTTTGTGAATTTGACCTTGAAATGTGTTGAAGAGTCAGGTGAAGCAAGGCCTAAAATGAGTGATGTGGTAAGAGAAATTGAGAACATATTGAAGTCATCTGGTGCAAACCCTACTGAGGAATCACCCTCCATCTCTTCTAGCTATGAAGAGGTAAGCAGAGGGAGTTCCAGCCATCCTTATAATAGCAACGACACCTTTGATTTGAGTGGAGAGTCTCCATATCCAAAAGTTGACTCTAGCTAA 2871 0.4138 MWERISVVLLLVLNYVLVAKGETDDVDFSTLKSLMSTWKNTPPEWEGTDPCEDWEGIKCRNTRVTSITLASTGLGGQLSGDIGSLSELEILDLSYNKDLTGPLPQSIGDLRKLSTLILVSCSFSGPIPDSIGNMQELLFLSLNSNGFSGVIPTSIGNLSKLYWLDLADNQLEGSIPVSGDGTLGLDNLHHAKHFHLGKNNLSGTIPLRLFSPEMALIHLLLESNKLVGKIPSTLGLVKSLEVVRLDGNSLDGPVPSNINNLTNVRDLYLSNNKLSGSPPDLTGMNALSYLDMSNNSFTPLDFPEWFSTLKSLTTLMMERTQLQGQVPSSLFELVNLQTVVLKDNKINGTLDVGSSYSSRLRLIDLETNSIDNIKQTEVSNVVIILKDNPVCQETNERGTYCSSSQSNFSYSTPPNNCEPGACSSDQISSPNCKCAYPYTGTLAFRSPSFTDLDNKTHYLMLEDSLMRSFKSHFVPVDSVLLSHPRRDSTGYLKLSLQVFPSGLDHFNRTGTLTIGFMLSNQTFKPPQPDFGPYFFLADGYEHFGNYEGLSESNKHSNIGIIIGAAVGGLVLLVLLLLAGVYAFRQKKRAEKAIGQSNPFRRWDTVDSKSDVPQLKEARMFTFEDLKKYTKNFSQVNDIGSGGFGKVYKGTLPDGQRVAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLLGFCFDQGEQMLVYEYLQNGSLKDALSGKSGIKLDWIRRLKIALGTARGLAYLHELVNPPIIHRDIKSNNILLDNRLNAKVSDFGLSKSMVDAEKDHVTTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVLMLELISAKKPLERGKYIVKEVKNAVDKTKGLYGLQEFIDPAMGLSSTTLIGFDKFVNLTLKCVEESGEARPKMSDVVREIENILKSSGANPTEESPSISSSYEEVSRGSSSHPYNSNDTFDLSGESPYPKVDSS* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2966 956 SUPERFAMILY Protein kinase-like (PK-like) 618 939 IPR011009 -
Vra7g2966 956 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 940 - -
Vra7g2966 956 Gene3D Phosphorylase Kinase; domain 1 603 707 - -
Vra7g2966 956 Pfam Leucine rich repeat 239 296 IPR001611 GO:0005515
Vra7g2966 956 ProSiteProfiles Protein kinase domain profile. 632 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2966 956 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 5 940 - -
Vra7g2966 956 ProSitePatterns Protein kinases ATP-binding region signature. 638 660 IPR017441 GO:0005524
Vra7g2966 956 MobiDBLite consensus disorder prediction 907 945 - -
Vra7g2966 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Vra7g2966 956 Pfam Protein tyrosine and serine/threonine kinase 635 901 IPR001245 GO:0004672|GO:0006468
Vra7g2966 956 SMART serkin_6 632 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2966 956 Gene3D Ribonuclease Inhibitor 280 416 IPR032675 -
Vra7g2966 956 CDD STKc_IRAK 638 905 - -
Vra7g2966 956 Gene3D Transferase(Phosphotransferase) domain 1 708 928 - -
Vra7g2966 956 SUPERFAMILY L domain-like 58 375 - -
Vra7g2966 956 MobiDBLite consensus disorder prediction 906 956 - -
Vra7g2966 956 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Vra7g2966 956 Gene3D Ribonuclease Inhibitor 180 279 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2966 Vra-Chr7 49618521 49625413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2966 1 954 Receptor kinase-like Gene Family AT5G49760 56.191 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vra7g2966 PK_Tyr_Ser-Thr 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2966 - - gmx:100811702 1514.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2966 7 49618521 49625413 Vra10g0815 10 14185632 14192707 PCT