Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2963 ATGGCAATTGCAGCCGCAAACTCATCGCCCACCATGAGTCTCAGCCAGAGCCAGAGCCAGGAGGACGTCACCACCGCTTCCACCACCAACGACAACACCAACAGTAACAACAACAACAACGATAACAAGCCCGACGATCACGAGCATGACATGGTTATGCCTGGTTTTCGCTTCCATCCAACTGAAGAAGAGCTCGTCGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAACTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCTTGGCGGCTATTGGGGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGAAAGTATCGAAACGGTGATCGTCCCAATCGTGTCACCACCTCTGGGTATTGGAAGGCGACGGGAGCTGATAGGATGATCCGAACGGAGAATTTTCGGTCAATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATACGAACTAGTTGGATTATGAACGAGTATCGCTTGCCGCAACACGAAACCGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGCGTGTACAAGAGAGCTGGAGTAGAGGACCATCCCTCCCTCCCTCGCTGTCTCCCAACAAGGCCATCTTCATCAAGAGCTTCTTCGCACTCCGAAACCAAAAAGCACAACGAGATGGTTCATCACAACATGGGATTTGCGGGACAATCGAAGCCAACCGAACAACTCGTTGACAAAATGAATGAAACGGAAGCAAGCAGTGATGTCAACACGGCTCTTGGACTTTCGAAATATAATGCTTACCGTGCTGCGATGGGTGCACTCAGCAGCACAATGGCACTTCCGGTTGTTCCAATGGACGAGGAAGGGCTGATGATGATGCAGCATCAGCAGCAGTCTAAGCAAGCAGCAGCACACGCAGGTGCTCCTGGGATTGGCACAATCTTCTCTGCTGGACCTTCTAGTTCCAATAACAATGGAGTGGTGAACATGGATGATCTGAATAGGCTAATGAGTTATCAGCAGCAGTACTACAATGTTCAAAGCCATCCCAATCAGTTCTCTACTCTGCTGATGCAACCATCACCAGTAGTGTCTCTCACCTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATCCCAGAGCCCCCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1230 0.4967 MAIAAANSSPTMSLSQSQSQEDVTTASTTNDNTNSNNNNNDNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSETKKHNEMVHHNMGFAGQSKPTEQLVDKMNETEASSDVNTALGLSKYNAYRAAMGALSSTMALPVVPMDEEGLMMMQHQQQSKQAAAHAGAPGIGTIFSAGPSSSNNNGVVNMDDLNRLMSYQQQYYNVQSHPNQFSTLLMQPSPVVSLTSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2963 409 MobiDBLite consensus disorder prediction 1 40 - -
Vra7g2963 409 Pfam No apical meristem (NAM) protein 54 178 IPR003441 GO:0003677|GO:0006355
Vra7g2963 409 SUPERFAMILY NAC domain 52 198 IPR036093 GO:0003677|GO:0006355
Vra7g2963 409 ProSiteProfiles NAC domain profile. 52 199 IPR003441 GO:0003677|GO:0006355
Vra7g2963 409 Gene3D NAC domain 61 202 IPR036093 GO:0003677|GO:0006355
Vra7g2963 409 MobiDBLite consensus disorder prediction 1 53 - -
Vra7g2963 409 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 28 404 - -
Vra7g2963 409 MobiDBLite consensus disorder prediction 205 229 - -
Vra7g2963 409 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 28 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2963 Vra-Chr7 49587517 49590197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2963 51 225 NAC Transcription Factor Family AT2G02450 88.000 4.42e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra7g2963 NAM 4.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2963 - - gmx:100792622 664.455