Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2959 ATGTCAGAAATGCGGGTGTCTGAGCTTCACTTGAAAAAGGAACTCACCCAAATACGCAAGGCTGCTCGAGTTCTCAGAGATCCCGGCACCACATCTTCGTGGAAGTCACCGCTCAGTTCATCAAGATCCGTGGCTGCATGGAACAGAGACAGTGGAAGTAGAAGGTTCAGCACCAACTCTCAACTTGCCAACAATGACAAAGAGAAAGAGAAGGAGAGGGAGAAAAAGGTGTTCTTGTACAATTGGAAGAACTACAAATCTTCGAGTGAGAAATACAACGAGGAAGAAGATGACGATGATGGTGATGATGGGGGGTCTTCGTCGCTTCTTGGGGACAGAGACAGAGACAGTTTGAGTGATGCTCGCAATGGTTGCGACTCTAAGAGTGATACATACCTGGCAGCTGGTGGTACCGGTGGCGGTGGTGGGACTCGTTCTTCTATTTTCAGATGTGGGGATGCTAATCTTGTTTCGAGAAGAACTGTCCCCGTTAAGAAAAAGAGTAAGAAAAATAACCCTCATTTTGATTTTTTAGCAAAATATCAACAGCATAGACAAACGAATCCAGGGAGAAATTTTGTGAGTTCTTCGAAGGCAATGCTCGAGGGGCATTCTTCTTTGCCATTTTTTAGCAGAGATGACTCTGTTGAGTTCTCTGATGATACCGAGGATTACACTAATTCTGAGGGCGTGAGACCGATTTCGGGGACTTCCCCTTTGCTTCTCAAACTCAGGCAAAAGAACTGGTCTCGCTCTTCCTCGAAGTTTTTGAGAAGAAGTGGAAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATCGGTACGGTCACCGTTATCCCAGCACCCTTGGATCCTGGGATGGCACCACCACTTCCGTGAATGATGGCGATGGAGATGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGTTGTGGAATTCCTTGCTATTGGTCCAAGAGGACTCCTAAACATAAAGGGATGTGTGGGAGTTGCTATTCTCCCTCACTGTCCGACACTTTGAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAACTATTTATCCCAGACACCGCAGATCGGTTTCGGCATCTCAAAAGAGAAGACTTTCTCAGAGGAGTGCTCGAGGTGTCATTCCATTACTCACAAACAGTGGTGATGCCAGAGAAGGGTCGTCTGTGGGAACCGGAAGGAGTGATGATGAACTTTCCACGAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGCTTGGATGGAAGAAGGTGGTCATCTAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGAGAAGAGGAGGGCACGCCAGAGAATAGTCGCTGTTTCAGCCAAAAGTATAGGCCGATGTTCTTTGGTGAACTGATTGGGCAGAATATTGTTGTTCAGTCACTTATCAATGCTGTTTCCAGGGGACGCATTGCTCCTGTCTATCTGTTTCAAGGTCCCCGTGGAACTGGCAAAACGTCAACCGCTAAGATATTTGCTGCTGCCTTGAACTGTGCAAGTCCTGATGAGAATAAACCTTGTGGCTACTGCAGGGAATGCAATAATCTCATTTCTGGTAAGAGCAATGATCTTTTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTCCTTAAAAGATTGTCAACTGAGTCATCGTCAGCCTCACAAAAATATACAGTTTTGGTTATTGATGAGTGTCACTTGTTACCCTCAAAGACGTGGCTGGGATTTCTCAAGTTCCTGGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGATAATGTACCACGGACAATACAATCTCGTTGCCAAAAGTACCTTTTTAATAAAATTAAAGATGTGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAAGAGAACCTTGATGTTGAAGCAGATGCACTGGACCTCATTGCTATGAATGCAGATGGATCGCTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGCTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTGTTGGAACTTTTGGAGTTGGCAATGTCATCAGATACTGTAGAGACAGTGAAAAGAGCTAGAGAACTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTTGCTGGCCTTATCATGGACATCATTGCTGGGTCATATGCAGTCGTTGACACCAGACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCTGAGTTGGAGAGGTTAAAAAATGCTTTGAAGCTTCTCTCTGAGGCTGAGAAACAGTTAAGAACATCCAGTGAACGTTGTACATGGTTCACAGCAACTCTTTTGCAGCTTGGTTCTACACCTTCTCCTGATCTCACGCAGTCAAGCAGCAGTAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCACGAGATGTTACCTCTGGCACGCACAAATCAGACCCTCAGTATGTTCCTCGAAAGTCACCTTTCTCTGGATCCCAGCAAAAGGCAGTAGATGATGATTCCAAACATCAAAAGGAATCAAAGATTGAAGGTTTCAGCTTGAAATCGAAGCCGTCAAACAGCCCAGTCTTAGATGATGGCTCTACAGTTGTATCATCTGATGATCTTATGGTGGGGAATACAATGTATAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATTGAGAAGTGCCACTCTAAGACATTGAGGCAGCTGCTGCACCATCATGGAAAGCTTGTGTCCATATGTGAAGTAGAAGATGTTTTGGTAGCATATATTGCTTTTGGTGACGCAGATATTAAAGTTCGGGCAGAGAGGTTTTTAAGAAGCATCACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTCCGAATAATCCACTTGGCAGATGGAGAAGGTGAAAACCAGGTTAATCTAACAGGTGTAAAGCAGGGAGAGTCAATAGTGGCTAGTGAGAAGGAACAAAGACAGGGTCATGTGAATGGAACGGAGTCTTATTCTAGTTTGCCTCCTTTACTTGATAGAAACCTTCAATCTAGGACTGCTTCATCAGATATCTTGGGTGAAGGTAATGGTGGGAAGGAGAGGAGACAAGATAATCCAATGCATAGAATTGAATCCATCATTCGTGAGCAGAGGCTGGAAACTGCCTGGTTACAGGCCGTAGAGAAAGGTTCCCCGGGATCATTAAGTCGTTTGAGACCTGAAAAGAATCAAGTACTGCCACAGAATGGTGTAGACCCAATGGAGTCCATGGAGTCAACAAGATTTTCCTCTCACCAGCATTGGGAAGACGAACCCAATAATGAACTCAAAGTTTTGACCCTTAAAAATGGAAGGGTCCCTCAGAAGGACCAGACTGGTAGAAAGGCAGATCGTTATCCCATGTCCCCAAGTTTATTGCATGATACCAGTTTAGCCACAATTTCTGGAAAAGACCATCCGGGATATGAATCGGGGTCAGGAGCTGGTGGTTGTGGGTTTTTATGTTGGAATAAGTCGAAGCAGAGAAGGGTAATAAAGGTGAAAGGTGGCACCCCAGTTAGAGCGCGCAGAGGAGCAAGTTTTGCGTTGTTTGGTGACTGTGGTAAGACAAAGAAAAGGGAGCGGAAAAGATAA 3741 0.4464 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNRDSGSRRFSTNSQLANNDKEKEKEREKKVFLYNWKNYKSSSEKYNEEEDDDDGDDGGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAGGTGGGGGTRSSIFRCGDANLVSRRTVPVKKKSKKNNPHFDFLAKYQQHRQTNPGRNFVSSSKAMLEGHSSLPFFSRDDSVEFSDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSGKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHKGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSVSASQKRRLSQRSARGVIPLLTNSGDAREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEEEGTPENSRCFSQKYRPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTAKIFAAALNCASPDENKPCGYCRECNNLISGKSNDLLEVDGTNKRGIDKARYLLKRLSTESSSASQKYTVLVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDVDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTRPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERCTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSGTHKSDPQYVPRKSPFSGSQQKAVDDDSKHQKESKIEGFSLKSKPSNSPVLDDGSTVVSSDDLMVGNTMYRCIDSGKLCDIWVHCIEKCHSKTLRQLLHHHGKLVSICEVEDVLVAYIAFGDADIKVRAERFLRSITNSMEMVLRRNVEVRIIHLADGEGENQVNLTGVKQGESIVASEKEQRQGHVNGTESYSSLPPLLDRNLQSRTASSDILGEGNGGKERRQDNPMHRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDPMESMESTRFSSHQHWEDEPNNELKVLTLKNGRVPQKDQTGRKADRYPMSPSLLHDTSLATISGKDHPGYESGSGAGGCGFLCWNKSKQRRVIKVKGGTPVRARRGASFALFGDCGKTKKRERKR* 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2959 1246 MobiDBLite consensus disorder prediction 29 63 - -
Vra7g2959 1246 PANTHER PROTEIN STICHEL-LIKE 1 187 1185 - -
Vra7g2959 1246 Gene3D - 640 701 - -
Vra7g2959 1246 Pfam DNA polymerase III subunits gamma and tau domain III 692 811 IPR022754 GO:0003887
Vra7g2959 1246 MobiDBLite consensus disorder prediction 1025 1077 - -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 1034 1060 - -
Vra7g2959 1246 Pfam DNA polymerase III, delta subunit 478 638 - -
Vra7g2959 1246 CDD AAA 477 635 - -
Vra7g2959 1246 SUPERFAMILY post-AAA+ oligomerization domain-like 709 810 IPR008921 GO:0003677|GO:0006260
Vra7g2959 1246 SMART AAA_5 495 645 IPR003593 -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 370 415 - -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 815 901 - -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 106 123 - -
Vra7g2959 1246 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 463 812 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vra7g2959 1246 MobiDBLite consensus disorder prediction 88 148 - -
Vra7g2959 1246 CDD HLD_clamp_pol_III_gamma_tau 638 701 IPR045085 -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 396 413 - -
Vra7g2959 1246 Gene3D - 455 636 IPR027417 -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 840 869 - -
Vra7g2959 1246 Coils Coil 771 801 - -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 887 901 - -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 870 886 - -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 815 829 - -
Vra7g2959 1246 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 187 1185 - -
Vra7g2959 1246 MobiDBLite consensus disorder prediction 25 73 - -
Vra7g2959 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 685 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2959 Vra-Chr7 49553169 49560213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2959 459 753 Core DNA Replication Machinery Family AT1G21690 23.684 1.08e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2959 - - gmx:100814391 2077.75