Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2956 ATGGAACTTTCGAGTCAAGAAGGAGAAATCCCAATCCCAATAAACAGCACTACGTATGGTGGGGGACACGGTAATGGACACGGTCATGGTCTCATGATTCACCATGACCCTCCACACCACAACCACAACCACATTATCTCCTCCACCGCGCCTACGAACGGCACACCCACTATGCATCAGGAGGATCATGGGTACAAGAAAGTGGTGCGGTACAGAGAATGCCTGAAGAACCATGCAGCGGCCATGGGAGGGAATGCCACTGATGGGTGCGGCGAGTTCATGCCGAGTGGAGAAGAGGGCACCATAGAGGCACTGAACTGTTCGGCCTGCCATTGCCACAGAAACTTCCACAGAAAGGAAGTGGAGGGTGAGCCGTCTTCATGTGACTACCACCCCTTCAACAGAAGAAGACTCATTCTGGGCCCTCACAAGAACCTCCTCCCTCCCGAGGCTCTTGGCTACCCTACAGGTAACATCCTTCCTTCTAGAAGCGTCCCACCACACCAGATGATAATGCCCTACAGCATTGGTCACCTCCCTTCAGAGTCTGATGAACAAGAAGACGGTGGAGGAATGGTGCAGCCTAGATCCTCCCAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTCAACTTTGCTGAGAGGGTTGGATGGAAAATCCAGAAACAAGAAGAGTCCGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTCAAGCGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTCGCTAAAAAGAATCCCCCTACTGCAGAAGCTTAA 816 0.5135 MELSSQEGEIPIPINSTTYGGGHGNGHGHGLMIHHDPPHHNHNHIISSTAPTNGTPTMHQEDHGYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCDYHPFNRRRLILGPHKNLLPPEALGYPTGNILPSRSVPPHQMIMPYSIGHLPSESDEQEDGGGMVQPRSSQLVKKRFRTKFTQEQKEKMLNFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTAEA* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2956 271 MobiDBLite consensus disorder prediction 1 24 - -
Vra7g2956 271 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Vra7g2956 271 Gene3D - 190 264 - -
Vra7g2956 271 SUPERFAMILY Homeodomain-like 194 263 IPR009057 -
Vra7g2956 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 266 - -
Vra7g2956 271 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
Vra7g2956 271 MobiDBLite consensus disorder prediction 1 22 - -
Vra7g2956 271 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 121 IPR006456 -
Vra7g2956 271 MobiDBLite consensus disorder prediction 180 199 - -
Vra7g2956 271 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 202 258 IPR006455 -
Vra7g2956 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4-LIKE 37 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2956 Vra-Chr7 49530667 49532427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2956 1 265 ZF-HD Transcription Factor Family AT1G14440 50.164 1.08e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra7g2956 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2956 - - gmx:100805652 446.047