Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2944 ATGACCACCTCAGCGGCTATCGAACAATTTGACAAATGCATGAATGGGCAAATAGAAGTAATTGCACGCGTTTGGCATTTATTTCAAGCCTACAAAAAGGACAAAATTCCTTTCAAAATAGATGAGGGTCTGTATTTGGGTTCGATTGGCACTGCAGTTAACAAGGCTTCTTTGAAAGACCATAATATTACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCTCATCCTGATGACTTTGTCTATAAAATTATACATGTTGTTGACAAAGAAGATGAAGACTTAAAAAAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCACTGTTTCGCTGGAAGATCAAGGAGTGTGACTATAGTTGTTGCATATCTGATGAGGACTCGTGGAATGAGCCTTTCTGAAGCTCTGCAACATGTAAGGAGTATACGACCAGAAGCACGTCCCAATCAGGGTTTTATTTGTCAGCTGGAGGACTTCGAAAAGTCTCTTCAAGGTGCCTCTAAGTCACTTTAG 549 0.3989 MTTSAAIEQFDKCMNGQIEVIARVWHLFQAYKKDKIPFKIDEGLYLGSIGTAVNKASLKDHNITHILTVAGRIPPAHPDDFVYKIIHVVDKEDEDLKKYFNECFDFIDEAKRLGGGVLVHCFAGRSRSVTIVVAYLMRTRGMSLSEALQHVRSIRPEARPNQGFICQLEDFEKSLQGASKSL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2944 182 Gene3D Protein tyrosine phosphatase superfamily 38 181 IPR029021 -
Vra7g2944 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 37 179 IPR029021 -
Vra7g2944 182 Pfam Dual specificity phosphatase, catalytic domain 44 173 IPR000340 GO:0008138|GO:0016311
Vra7g2944 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 98 156 IPR000387 GO:0016311|GO:0016791
Vra7g2944 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 14 178 - -
Vra7g2944 182 PANTHER BNAA01G23680D PROTEIN 14 178 - -
Vra7g2944 182 CDD DSP 37 170 - -
Vra7g2944 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 177 IPR020422 GO:0006470|GO:0008138
Vra7g2944 182 SMART dsp_5 36 174 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2944 Vra-Chr7 49465084 49467440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2944 39 177 Protein tyrosine phosphatase (PTP) family AT3G06110 60.432 9.66e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2944 - - gmx:100306342 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2944 7 49465084 49467440 Vra7g2944 7 49465084 49467440 ECH