Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2942 ATGGGAGTTTCATGGAGTAACAATAACAGAAGAAGAAGAAGAAGCACCTACTTTCATCCTCATCCTCATCCTCATCCTCCACATCTCCCACCCCCTTATTATTACCCTCCGCCGCTTCTGCCACCACCAGCACCGCCTCCACAAGGTTACTTTATCACCTCATCCAACCCTTCTGCTTCTACCTCTACCACCACCGGCTATCTGGGTCCTCCTCCTCAGTATTACCCAAATGTCTACACTGCCAATTCTGTGATGCTTCATCAGCAGCCCTTGTATGCAAATGAGGAGGGAAACGAAATTCACGTTTCGCCACCACCCTATGTCGATCATCAAACCACTAAGAAGATAAGGAACGATGTCAATTTGCATAAACACACGCTACACCTCTGCATAGATCCTAACAATCCAGATCACCACTTGATTTCTTTTGATTTCGATGCCCTCTTTGATGGCAGCATTACTATCTTCTACTTAGCCAAAGAAGAAGAAAATTGTAGGTTTAATCCACTGTTTCCTGATTTGTTTGAGCCAATCACATTTCCCTTTCAAAAAGGGGCAGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGCTTTTTTGAGTTGGATGATCTTTTTCGACCCTCAGCCGGAGAAGATGTATTTCCCCTTGTCATATGTGCTGAAACTAATAGTATTTCTGTGCTGGATGCATCCCCTCACATGCAAATCACTCAAGCTGTCTTAGAAAAAAACAACGGTGTTGGTCCTTTCCAAGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTTCGTTATGAGCTCAGAGAGTTATATGGAATAGGAAGTTCAGCAACAGCAGATTTTGATGATAATGATAGCGGAAAGGAGTGTGTAATATGCATGACTGAAGCCAAGGACACTGCTGTCTTGCCCTGCCGACATATGTGCATGTGCAGTGAGTGTGCTAAAGCTTTGCGGTTTCAATCAAATAAGTGTCCTATATGCCGTCAACCTATTGAGGAACTTATAGAGATCAGGATAAACGTTGGCAATCAATGA 1053 0.4359 MGVSWSNNNRRRRRSTYFHPHPHPHPPHLPPPYYYPPPLLPPPAPPPQGYFITSSNPSASTSTTTGYLGPPPQYYPNVYTANSVMLHQQPLYANEEGNEIHVSPPPYVDHQTTKKIRNDVNLHKHTLHLCIDPNNPDHHLISFDFDALFDGSITIFYLAKEEENCRFNPLFPDLFEPITFPFQKGAGQKFCQPSGTGIDLGFFELDDLFRPSAGEDVFPLVICAETNSISVLDASPHMQITQAVLEKNNGVGPFQVKVVRQILWIDDVRYELRELYGIGSSATADFDDNDSGKECVICMTEAKDTAVLPCRHMCMCSECAKALRFQSNKCPICRQPIEELIEIRINVGNQ* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2942 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 344 IPR013083 -
Vra7g2942 350 ProSiteProfiles Zinc finger RING-type profile. 295 334 IPR001841 -
Vra7g2942 350 SUPERFAMILY RING/U-box 294 340 - -
Vra7g2942 350 MobiDBLite consensus disorder prediction 1 25 - -
Vra7g2942 350 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 349 - -
Vra7g2942 350 SMART ring_2 295 333 IPR001841 -
Vra7g2942 350 Pfam Zinc finger, C3HC4 type (RING finger) 293 339 - -
Vra7g2942 350 PANTHER MAHOGUNIN 1 349 IPR045194 GO:0061630
Vra7g2942 350 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 294 334 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2942 Vra-Chr7 49439486 49442494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2942 107 350 C3H Transcription Factor Family AT3G06140 63.855 1.69e-106 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2942 - - vun:114177610 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2942 7 49439486 49442494 Vra7g2942 7 49439486 49442494 ECH