Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2937 ATGAACATGGTATCGGTTTCAGCGGTGTGCAAGGCGGTGGCGAGTATCAACCCGGGACTGACGATGTCTCCGCTGTCGCTGTTCAGGCAGCGCAGCAAAGAAAAGGTTGTGGTCATAATGGGAGCGACGGGGACAGGAAAGTCAAAGCTTGGCATAGACCTTGCCACACACTTCCCACCAGCGGAGATAGTCAACTCCGACAAAATGCAAGTGTACGAAGGTCTCGACATCACCACCAACAAAGTCACAGAAGACGAGTGCCGAGGGGTCCCACACCATCTCCTAGGCACTGTCCAACCCAACATTGATTTCACTGCCGACGATTTTTGCCACCACGCCACCCTCGCCGTCGGCTCCATTTTGAAACGCGACGGCTTGCCCATCATTGCGGGTGGCTCTAACTCTTTCCTCGACGCCTTGGTCAACCACTACCCTGACTTTCGCTTGCGCTACCACTGTTTGTTCCTCTGGGTCGACGTCTCCCTCCCGGTCCTCCACTCCTCGCTCTCCGCACGTGTGGATCGCATGATCCGCGCCGGCCAGGTCGACGAGGTTAGACCATTTTTCCAATACCACAACCGCGACTACACCCTGGGCATTCGAAAGGCCATTGGCGTCCCCGAGTTTCATTCCTTTTTCCAGGCCGAAGCCGACGGAGCCGACGAGAGGACCAAGGAGAAGCTCCTCCAGGCTGCCATTGCCTCCATCAAAATCAACAACTGCAACCTCGCCACCCGACAGCTACACAAGATCCACCGCCTCCACGCCATTTTCAAACGGAACATGCACCGCCTCGACGCCACCGAAGTTTTCCTCAGGAGCACTCCCCAAGAAGCAGAGCAGGCGTGGGAGGAACTCGTTCTATCCAAAAGCCGAAGGATTCTTCACAACTTCCTCTACGACGACGCGCATGTCGATGTTGCTCTTGCTTCTGTTATCGCTTCTTCTTCGCCGCCCATGGCCGCGGCCGCCGCAACTCGCTAG 984 0.5661 MNMVSVSAVCKAVASINPGLTMSPLSLFRQRSKEKVVVIMGATGTGKSKLGIDLATHFPPAEIVNSDKMQVYEGLDITTNKVTEDECRGVPHHLLGTVQPNIDFTADDFCHHATLAVGSILKRDGLPIIAGGSNSFLDALVNHYPDFRLRYHCLFLWVDVSLPVLHSSLSARVDRMIRAGQVDEVRPFFQYHNRDYTLGIRKAIGVPEFHSFFQAEADGADERTKEKLLQAAIASIKINNCNLATRQLHKIHRLHAIFKRNMHRLDATEVFLRSTPQEAEQAWEELVLSKSRRILHNFLYDDAHVDVALASVIASSSPPMAAAAATR* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2937 327 Gene3D - 33 299 IPR027417 -
Vra7g2937 327 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 24 304 - -
Vra7g2937 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 190 IPR027417 -
Vra7g2937 327 Pfam IPP transferase 70 146 - -
Vra7g2937 327 Pfam IPP transferase 150 249 - -
Vra7g2937 327 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 24 304 IPR039657 -
Vra7g2937 327 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2937 Vra-Chr7 49390315 49392386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2937 150 299 C2H2 Transcription Factor Family AT2G27760 29.545 2.95e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2937 K10760 - gmx:100782474 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2937 7 49390315 49392386 Vra7g2937 7 49390315 49392386 ECH
Vra7g2937 7 49390315 49392386 Vra10g1014 10 15905136 15906835 PCT