Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2936 ATGGCACAACTGGTATTACTGAACTCATGTCCACCTCAATATGTATTGCTTCGGCGGGTCAGAATTTCGAAGCCATCGATATGGGTCAGGAAACCGACTACCGTTTCTTCACCATCATTTTCTACCTCAGCTCCTCTTAGCTACGCATCGTTTTGCTGCAGCTGTAGCGCTACCTCTTCTGTCGAACCCGATTTATCCTCTTCAGCCAAAATCTTTGTCAAAGGGCTACCTCACTCAACCTCTGAAGGAAGATTGATGAAGGTGTTTTCAGAGTTTGGTGAAGTTAATCTCGTCCAGCTTCCAATAGATGAAAAATCAGGAAAGTCTTTAGGATTTGCATTTATTTGGTTTGTAAAGGAAGAGTCTGCGCAATTGGCTGTCCAAGAGATGAATGGAAAGTTTTTTGATGGCAGATTTATTTATGTTACAATTGCAAAGCCTGGATCATTAAAAAATTTGAAGACGACGACAGCCTACAAATTTTAA 486 0.4115 MAQLVLLNSCPPQYVLLRRVRISKPSIWVRKPTTVSSPSFSTSAPLSYASFCCSCSATSSVEPDLSSSAKIFVKGLPHSTSEGRLMKVFSEFGEVNLVQLPIDEKSGKSLGFAFIWFVKEESAQLAVQEMNGKFFDGRFIYVTIAKPGSLKNLKTTTAYKF* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2936 161 SUPERFAMILY RNA-binding domain, RBD 61 149 IPR035979 GO:0003676
Vra7g2936 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Vra7g2936 161 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 19 161 - -
Vra7g2936 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Vra7g2936 161 SMART rrm1_1 70 143 IPR000504 GO:0003723
Vra7g2936 161 Gene3D - 45 155 IPR012677 -
Vra7g2936 161 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 19 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2936 Vra-Chr7 49380388 49383105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2936 26 147 Eukaryotic Initiation Factors Gene Family AT3G11400 31.008 2.61e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2936 - - gmx:100791917 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2936 7 49380388 49383105 Vra7g2936 7 49380388 49383105 ECH