Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2926 ATGCCTCATGATCAGAGAAAAAAGTCATCTGTAGATGTAGACTTCTTTACAGAATATGGCGAAGGGAGTAGATACAGAATAGAGGAAGTGATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCTTATGATACACACACAGGAGAGAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACACGTTTCTGATGCCACCCGCATTCTTCGGGAGATCAAGCTTCTTAGACTCTTACGCCATCCTGATATTGTGGAGATCAAGCATATTTTATTACCTCCTTCTAGAAGGGAGTTCAAAGATATATATGTTGTATTTGAACTTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTGCAGAGCATTACCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTAAAGTATATACACACAGCAAATGTTTTTCACCGAGATCTGAAGCCGAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTGGCTTTCAATGATACACCGACTGCTATATTTTGGACAGATTATGTTGCTACACGGTGGTATAGGGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGACATATGGAGCATTGGCTGCATTTTCGCAGAACTTTTAACTGGGAAACCTCTTTTTCCAGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTTGGAACACCCTCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGAAGATACTTGAGTAGTATGCGCAAGAAGAAGCCAGTTCCTTTCTCTCAAAAGTTTCCCAATGTAGATCCCCTTGCTCTTCGGGTTTTAGAAAGAATGTTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATCCATATTTTAAAGGCTTGGCAAAAGTTGAGAGAGAGCCTTGTTCTCAGCCAGTTACCAAGATGGAGTTTGAATTTGAGAGACGTAGGATAACAAAGGAAGACGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCAAAGATGTTAAAAGAACATCTAGACGGAGAAGAGCCAACAGGATTCATGTATCCAAGTGCCGTGGACCATTTCAAAAAACAATTTGCATATCTTGAAGAGCATTATGGAAAAGGTGGAACTGTTACTCCACCTGAGAGGCAACATGCATCATTACCCAGGCCATGTGTGTTGTATTCAGATAACGAAAGGCAAAATATGGCAGTGGTTGCGGATGATCTCTCCAAGTGTAGCATCAAAGAAGTTGAGAAGCCAGCGATAGACAAGACCGGTGGTATCCCAATGACCAGGCTTCCTTTACCAGCTCCTCAAAATATTAAAGGTGTTGCAGCACGTCCAGGAAAAGTTGTAGGTTCAGTACTGCATTACAACAACAGTAGGGTGGCCGAGACTGAGCAGCGGAAGACGGGTAAAAACCCGTCTGTTTCAGCCAAGTATGCTGCTCAAAGCTGTTCATACCCAAGAAGAAACCCAAACTGTAAAATTGAGAGGGCAGTTGAAGGAATTGAAGGTGCTAATGGACTTCAGACAAAGCCTCAATATCTTGCACGCAAAGTTGCTGCTGCTCAAGGGGGACCTGGTGGTAGTTGGTATTGA 1677 0.424 MPHDQRKKSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTAEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNVDPLALRVLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPCSQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEHLDGEEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRPCVLYSDNERQNMAVVADDLSKCSIKEVEKPAIDKTGGIPMTRLPLPAPQNIKGVAARPGKVVGSVLHYNNSRVAETEQRKTGKNPSVSAKYAAQSCSYPRRNPNCKIERAVEGIEGANGLQTKPQYLARKVAAAQGGPGGSWY* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2926 558 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 478 - -
Vra7g2926 558 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Vra7g2926 558 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Vra7g2926 558 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2926 558 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2926 558 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 478 - -
Vra7g2926 558 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vra7g2926 558 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2926 558 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vra7g2926 558 CDD STKc_TDY_MAPK 24 361 - -
Vra7g2926 558 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2926 Vra-Chr7 49292705 49298953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2926 1 558 MAP Kinase Gene Family AT5G19010 78.223 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vra7g2926 Pkinase 4.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2926 - K04371 gmx:100799442 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2926 7 49292705 49298953 Vra7g2926 7 49292705 49298953 ECH
Vra7g2926 7 49292705 49298953 Vra10g1026 10 16005903 16015136 PCT