Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2898 ATGGGCAGGTATCGAAGCCGGAGCAGAAGCTATAGTCCTCGGCGACGAAGCAGAACCCCGCCGCCACCTCCGTCGCGTGGTCGCAAGCGCTATGTCGATGACCGGTACGGTGACAGCAGGTCATACAGGGACCGCCGCTCACCTCTTCCTTCTGGTTTACTCGTTCGCAATCTTCCCCTTGATGCCAGGCCCGAGGACCTTAGGATCCCTTTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCCAAAAATTACTACACTGGTGAACCACNGGGCTTTGGATTTGTGAAATATCGATATGGTGAAGACGCAGCTGAGGCAAAACAACATCTTAATCACACTATCATTGGTGGACGTGAAATAAGAATTGTTTTTGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTCTTAGTTCTCGAGGAAGAAGGAGAAATCGATCTAGATCCCCACAACGTCGACATCGCTCCTATTCTCGGTCTCCATCACCTGCTAGGGATGATTCAAGGGATGACAGAGGTAGGGATGATTATTATTCTCCAGAGCGATCAAGATCTTATTCTAGGTCTCTCTCCCCTGGTGGTGGGAAGGACTACAGGAAGTCCCCTCGGGAGAACGGTCGGAGTCCTAGTGACAAGAAGGCTCAGACGCCTAGCAGATCCCAGAGCCCTAGGGGTAATGATCACAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGA 732 0.5096 MGRYRSRSRSYSPRRRSRTPPPPPSRGRKRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPXGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRLSSRGRRRNRSRSPQRRHRSYSRSPSPARDDSRDDRGRDDYYSPERSRSYSRSLSPGGGKDYRKSPRENGRSPSDKKAQTPSRSQSPRGNDHSPSRSRSRSYSPR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2898 243 MobiDBLite consensus disorder prediction 27 45 - -
Vra7g2898 243 MobiDBLite consensus disorder prediction 133 243 - -
Vra7g2898 243 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 243 - -
Vra7g2898 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vra7g2898 243 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 243 - -
Vra7g2898 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Vra7g2898 243 MobiDBLite consensus disorder prediction 213 243 - -
Vra7g2898 243 Gene3D - 3 139 IPR012677 -
Vra7g2898 243 SUPERFAMILY RNA-binding domain, RBD 53 157 IPR035979 GO:0003676
Vra7g2898 243 MobiDBLite consensus disorder prediction 143 157 - -
Vra7g2898 243 MobiDBLite consensus disorder prediction 161 184 - -
Vra7g2898 243 MobiDBLite consensus disorder prediction 1 49 - -
Vra7g2898 243 SMART rrm1_1 52 125 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2898 Vra-Chr7 49088451 49093120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2898 43 221 Eukaryotic Initiation Factors Gene Family AT1G22760 24.599 6.81e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2898 K12900 - gmx:100788749 285.034