Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2889 ATGTCTACCATGCTTGTTGGAGCAATGTTCCACAAACTCACCACAGTCATGACCTCTGATCATGCTTCTGTTGTCTCCATGAACATTTTTGTTGCCCTTCTGTGTGCTTGCATCATCATCGGTCATCTGTTGGAAGAGAACCGATGGATCAATGAATCCATCACTGCCCTTCTAATGGGTCTTTGTACTGGGGTCTTTATACTGCTTACTACTGGAGGAAAAAGCTCTCATATACTAGTCTTCAGTGAAGATCTTTTCTTCATTTACCTTCTCCCTCCCATCATTTTCAATGCCGGGTTTCAAGTGAAGAAGAAACAATTTTTCCGCAACTTTATGACTATTATGCTCTTTGGTGCAATTGGTACTTTGATATCATTCTGCATCATATCACTGGGTGCCATACATTTTTTTCAGAAGTTGGACATTGATTCCCTCAAGATTGGAGATTTTCTTGCAATTGGAGCAATATTTTCAGCAACAGATTCAGTTTGCACGTTGCAGGTTCTTAATCAGGATGAGACTCCTTTACTATATAGCCTGGTCTTTGGGGAAGGAGTAGTCAATGATGCTACCTCTGTAGTGCTCTTCAAAGCAATTCAAAATTTTGACCTCTCTCACATTGACTCAAATACTGCCTTACAGTTAATAGGAAATTTTTTATACCTATTCATTGCAAGCACTGTGTTGGGAATCTTTGCTGGATTGCTTAGTGCTTACATAATCAAAAAACTCTATTTTGACAAGCTAATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTGGCTGAACTATTTTCTTTGAGTGCCATTCTGACTGTTTTCTTCTGCGGAATTGTGATGTCTCACTACACGTGGCATAATGTAACTGAAAGTTCAAGGGTGACAACAAAGCATGTTTTTGCCACTTTGTCATTCATTGCTGAAATCTTCATCTTCCTCTATGTGGGGATGGACGCATTAGATATAGAGAAGTGGCGAATCGTAAGTGAAAGCCCAAGAAAATCTATTGGGGTCAGTTCGTTGCTGTTGGCACTTATTCTAGTAGGAAGAGCTGCATTTGTTTTCCCTCTGTCCTTCTTATCAAACTTGCTTAAGAAGTCTCAATCTGAGAAAATTGAGTTAAAGCAACAAGTGACAATTTGGTGGGCTGGTCTCATGCGTGGAGCAGTTTCTATCGCACTTGCTTACAATCAGTTTACTCGGTTGGGCCATACTAAATTGCGTGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGGCATTTGGGTTGATGACAAAGCCACTTGTAAGGCTATTGCTTCCTTCGTCAAAGCATGTGATGAGCTTGGCGTCCCCACCATCGACACCAAAATCATTCACAGTGCCACTTCTTGGCAGTGGAAGAGAGGATTCATCATGGACCAATGGTGGCACCCCAAATGGGCCTCCTCCAACCACCACCTTTAGAATGCTACTAAGTTCCATTCCTACTCGTGGGGTGCACCACTATTGGCGAAAGTTTGATGATTCTGTCATGCGACCCGTGTTTGGTGGACGAGGTTTTGTGCCCTATGTTCCCGGGTCACCCCTTGAGCAAAGTGTTCATCAGTGGCATGCCAGTTAG 1653 0.4247 MSTMLVGAMFHKLTTVMTSDHASVVSMNIFVALLCACIIIGHLLEENRWINESITALLMGLCTGVFILLTTGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFQKLDIDSLKIGDFLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDSNTALQLIGNFLYLFIASTVLGIFAGLLSAYIIKKLYFDKLIRHSTDREVALMVLMAYLSYMLAELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHVFATLSFIAEIFIFLYVGMDALDIEKWRIVSESPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLLKKSQSEKIELKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTLAFGLMTKPLVRLLLPSSKHVMSLASPPSTPKSFTVPLLGSGREDSSWTNGGTPNGPPPTTTFRMLLSSIPTRGVHHYWRKFDDSVMRPVFGGRGFVPYVPGSPLEQSVHQWHAS* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2889 550 Pfam Sodium/hydrogen exchanger family 29 447 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra7g2889 550 PANTHER SODIUM/HYDROGEN EXCHANGER 3 9 548 - -
Vra7g2889 550 Coils Coil 367 387 - -
Vra7g2889 550 Gene3D - 146 198 - -
Vra7g2889 550 PRINTS Na+/H+ exchanger signature 85 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra7g2889 550 PRINTS Na+/H+ exchanger signature 99 113 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra7g2889 550 PRINTS Na+/H+ exchanger signature 114 122 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra7g2889 550 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra7g2889 550 PANTHER SODIUM/HYDROGEN EXCHANGER 9 548 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2889 Vra-Chr7 49017061 49020842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2889 12 546 Antiporters AT3G05030 73.792 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2889 - - ccaj:109808409 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2889 7 49017061 49020842 Vra7g2889 7 49017061 49020842 ECH