Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2888 ATGGATGATGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCCCATGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCAAGTGGCCACGGCGGAGAAGCGTGGTGGCTTGCGCCGGAGTGTGCCGCACCTGGAGGCTGATCATCAAGGAGATTGTCAGGCCACCTCAACTCTCTTCCAACATAACATTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAATAATGGCACACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCACTAGCTGATGATGGGAAATTCCTTTTAGCCGCGCGAAAGTTCAGACGCCCAACCTGCACAGATTATATTATCTCCCTGGATTCGGATTATATGTCCAGGGAAAGCAATGCCTACATAGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAGTCTACGATATCCAACTGCCTCATTCAAGGGCAAATATGGCAAAAAGTTGCTCCACTAAGCTGGTGAATCCAAAACAAGTTTCACCTAAGGTCCCTGCAGGCAACTACCCAGTTGCCCATATCTCATATGAATTGAATGTATTAGGGTCCAGGGGGCCAAGGAGAATGCATTGTGTCATAGATAGCATTCCTGCTTCTGCTATTGAACCAGAACGGGTAGCTCCTTCACAGACCAGTTATTCTGTTAGTAACATAGGTACTTCATTCCCATTTTTTCAGACAAACTCAACTCATATGGAAAACTCCATATCTGGAGAGCAGAACAATAAAAGAGATGACGTTCTAGTGTTGAGAAATAAGGCTGCCAGGTGGCATGAGCAGATGCAGTGTTGGTGCTTAAACTTTCACGGGCGAGTGACAGTTGCTTCAGTTAAAAACTTTCAGCTGACTGCTTTGCCAGTAAATGGACATGCTGAACCACAAGAGGATGATGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGCTACCACGGTTGCTTGCGAATGA 1083 0.4645 MDDGLEQSWWANMPHELLREVLLRIESSEAKWPRRRSVVACAGVCRTWRLIIKEIVRPPQLSSNITFPISLKQPGPREHLLQCFIRRNNGTQTYYLFLSLSSALADDGKFLLAARKFRRPTCTDYIISLDSDYMSRESNAYIGKLRSNFLGTKFTVYDIQLPHSRANMAKSCSTKLVNPKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMHCVIDSIPASAIEPERVAPSQTSYSVSNIGTSFPFFQTNSTHMENSISGEQNNKRDDVLVLRNKAARWHEQMQCWCLNFHGRVTVASVKNFQLTALPVNGHAEPQEDDVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2888 360 Pfam Tub family 71 355 IPR000007 -
Vra7g2888 360 PANTHER TUBBY-RELATED 4 360 - -
Vra7g2888 360 SUPERFAMILY F-box domain 4 53 IPR036047 GO:0005515
Vra7g2888 360 PRINTS Tubby superfamily signature 125 141 IPR000007 -
Vra7g2888 360 PRINTS Tubby superfamily signature 141 165 IPR000007 -
Vra7g2888 360 PRINTS Tubby superfamily signature 190 217 IPR000007 -
Vra7g2888 360 PRINTS Tubby superfamily signature 272 289 IPR000007 -
Vra7g2888 360 PRINTS Tubby superfamily signature 290 306 IPR000007 -
Vra7g2888 360 PRINTS Tubby superfamily signature 317 336 IPR000007 -
Vra7g2888 360 PRINTS Tubby superfamily signature 338 360 IPR000007 -
Vra7g2888 360 SUPERFAMILY Tubby C-terminal domain-like 59 360 IPR025659 -
Vra7g2888 360 Gene3D Tubby Protein; Chain A 68 360 IPR025659 -
Vra7g2888 360 Pfam F-box domain 10 57 IPR001810 GO:0005515
Vra7g2888 360 ProSitePatterns Tub family signature 1. 290 303 IPR018066 -
Vra7g2888 360 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2888 Vra-Chr7 49004493 49007141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2888 3 360 TUB Transcription Factor Family AT2G47900 65.565 1.03e-173 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vra7g2888 Tub 1.4e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2888 K19600 - gmx:100794141 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2888 7 49004493 49007141 Vra7g2888 7 49004493 49007141 ECH
Vra7g2888 7 49004493 49007141 Vra10g1071 10 16467208 16472478 PCT