Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2886 ATGGGGTGTGTGTTTGGGAAAGGAGCGTCGAAGAGGAGAGAGGAAGTGAAAGTTGAAAGCGCAGAAGAAGAGGGTGCTGTTCAGAACGATGGGAATGTGAAGGAGGGTGGAGAAGAGGAAAAGAACAAGCCCTCAAAAGGGGAGAGAAGGCGATCCTCGAAGCCGAATCCCAGGTTAAGCAATCCACCCAACCATGTACATGGTGAGCAAGTAGCTGCAGGGTGGCCCTCTTGGCTCACCAAGGTTGCTGGGGAAGCTATTAATGGGTTGATCCCCAGAAGAGCTGACACTTTTGAAAAACTGAATAAGGTTGGACAAGGTACATATAGCAATGTTTACAAAGCGAAGGACACTTTGACAGGGAAAATTGTTGCCCTAAAGAAGGTCCGCTTTGACAATTTAGAGCCGGAGAGTGTGAAATTCATGGCCAGAGAGATCCTTATTCTGCGCCATCTGGATCATCCCAACGTTGTCAAACTGGAAGGTTTAGTGACTTCAAGGATGTCATGCAGTTTGTACCTTGTTTTTGAATACATGGATCATGATTTGGCTGGACTTGCTACAAGTCCAACAGTAAAGTTCACAGAGTCTCAGGTTAAATGCTATATGCATCAGCTACTTTCCGGACTGGAACACTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAATGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTCATCAAAGGCACCCTATGACCAGCAGGGTGGTAACTTTATGGTATCGACCTCCAGAGCTTCTCCTTGGAGCCACAGATTACGATGTTGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAGTTGTTGGCTGGCAAGCCTATTATGCCTGGTCGAACCGAGGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGATGAATATTGGAAAAAATCAAAGCTTCCACATGCTACCATTTTTAAGCCCCGACAATCATACAAGAGGTGCATAGAAGAGACATTTAAGAATTTCCCGGCATCATCCCTACCACTGATTGAGACCCTTCTTGCAATTGATCCAGCTGAACGCCAAACTGCCACAGCTGCATTACACAGTGAATTCTTTACTACAAAACCTTTTGCCTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACAAAACTTCGGGATGAAGAAGCTAGAAGATTGAGAGCTGCTAACAAAACTAATGCTGATGTAAAGAAATCACGTCCACGTGATAGAGGTGGAAGGGGAATTCCAATTCCAGATACCAATGCTGATTTGCAAGCAAATATTGATAAATGGCGACTGGTAACACACGCAAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCTCATGAAGATGGAAGTCTAGGGTACCCTTTGGGTTCTTCACATCACATGGATCCAATTTTTGATCCTTCTGATGTTCCATTTAGTTCCACAAAGTTATCATATCCAAAATCAAATATCCAGACCTGGTCTGGTCCCTTAGTGGAAACTAGTATGGATGCACCAAGAAGAAAGAAGAACGTGCCAGGGAATGGCCGCACACATTCAAAGAATGGCTCCTATAGATAA 1641 0.4467 MGCVFGKGASKRREEVKVESAEEEGAVQNDGNVKEGGEEEKNKPSKGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLTKVAGEAINGLIPRRADTFEKLNKVGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVVKLEGLVTSRMSCSLYLVFEYMDHDLAGLATSPTVKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILRIADFGLASFFDPHQRHPMTSRVVTLWYRPPELLLGATDYDVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPRQSYKRCIEETFKNFPASSLPLIETLLAIDPAERQTATAALHSEFFTTKPFACEPSSLPKYPPSKEMDTKLRDEEARRLRAANKTNADVKKSRPRDRGGRGIPIPDTNADLQANIDKWRLVTHANAKSKSEKFPPPHEDGSLGYPLGSSHHMDPIFDPSDVPFSSTKLSYPKSNIQTWSGPLVETSMDAPRRKKNVPGNGRTHSKNGSYR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2886 546 PANTHER CELL DIVISION PROTEIN KINASE 39 529 - -
Vra7g2886 546 Gene3D Phosphorylase Kinase; domain 1 87 180 - -
Vra7g2886 546 CDD STKc_CDK9_like 98 382 - -
Vra7g2886 546 MobiDBLite consensus disorder prediction 416 445 - -
Vra7g2886 546 MobiDBLite consensus disorder prediction 503 519 - -
Vra7g2886 546 SMART serkin_6 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2886 546 MobiDBLite consensus disorder prediction 8 24 - -
Vra7g2886 546 SUPERFAMILY Protein kinase-like (PK-like) 93 387 IPR011009 -
Vra7g2886 546 MobiDBLite consensus disorder prediction 1 70 - -
Vra7g2886 546 MobiDBLite consensus disorder prediction 416 436 - -
Vra7g2886 546 PANTHER OS01G0367700 PROTEIN 39 529 - -
Vra7g2886 546 MobiDBLite consensus disorder prediction 33 55 - -
Vra7g2886 546 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2886 546 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Vra7g2886 546 Pfam Protein kinase domain 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2886 546 Gene3D Transferase(Phosphotransferase) domain 1 181 422 - -
Vra7g2886 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Vra7g2886 546 MobiDBLite consensus disorder prediction 503 546 - -
Vra7g2886 546 MobiDBLite consensus disorder prediction 462 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2886 Vra-Chr7 48993685 48997366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2886 93 420 Core Cell Cycle Gene Families AT5G10270 51.744 1.43e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra7g2886 Pkinase 4.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2886 K08819 - gmx:100814207 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2886 7 48993685 48997366 Vra7g2886 7 48993685 48997366 ECH
Vra7g2886 7 48993685 48997366 Vra10g1073 10 16482507 16488084 PCT